Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200388"

Accession numberr200388 [export]
Locus nameprfB
Recode1 nameprfB_p_pro_cdif
DescriptionBacterial release factor 2
Recode statusReviewed

Organism

Genomic classBacteria (Chromosome)
OrganismClostridium difficile [details]

Sequence

GenBank IDs
SequencemRNA of 1108 nucleotides [sequence]
OrganisationTrans/Interaction (1)

Recoding event

Event type+1 Frameshifting (position: 76)
DescriptionAutoregulation of RF2 biosynthesis.
ATGTTAAAGT TACAAGAGTA TAAACATAGT ATGGAGCAGA TGGCTTCAAA TTTAGAAGAA TTGAGGGTTT CTCTTTGACA TAGCTTCATT GATGAAAAAT ATACAAATTA ATGAAGAAAA GATGAATCAA CAAGACTTTT GGAATGATAA TGAAGTCGCT CAAAGAGTAC TTCAAGAAAA TAAATCTTTA AAAGAGACAT TAGAAGAATA TGAAAGCTTA AAAAGCTTAT TAGAAGATAT AGAAGTATTA ATTGAAATAG GTTTAGAAGA AGATGATGAT TCTGTAGAAA GAGATATAGA AAAGTCCATA GAATCAATGG AAGAAAAATT ATCTGAAATG AAAATAAAGA CTCTTCTAAA TGGAGAGTAT GATAAAAATA ATGCTATATT ATCTATAAAT GCTGGTACTG GTGGCTTAGA TGCTCAAGAT TGGGCTCAAA TGCTTTTGAG AATGTATATA AGATGGTCAG AAAGTAAGGG TTATAAAGTT AAGCTTTTAG ATATAATATC AGACCCTGAA GCAGGGATAA AGACAGCTAC AATTCTTGTA GAAGGAACAA ATGCTTATGG GTATTTAAAG AGTGAAAAAG GAGTTCATAG ATTAGTGAGA ATATCTCCAT TTGACCCATC AGGAAAAAGA CATACTTCAT TTGCATCTAT AGATGTAACA CCAGAGTTAG ATGAAAATAT AGAAGTAGAA ATTAATCCAT CAGATTTAAA GATAGACACA TATAGAGCTT CTGGAGCTGG AGGGCAACAT GTAAATACTA CTGATTCAGC AGTTAGAATA ACACATATCC CTACTGGTGT AGTAGTTCAG TGCCAAAATG AAAGGTCTCA GCATCTAAAT AAGGACAGAG CTATGAGACT TTTAATGGCA AAATTGATAG AATTAAAAGA GTTAGAACAA AAGGAAAAAA TAGAAGATAT ACAAGGCAAA TACTCACAAA TAACTTGGGG TAGTCAAATT AGGTCATATG TTTTTCAACC ATATAAATTG GTTAAAGACC ATAGAACAAA TGCTGAGTTT GGAAATGTAG ATAGTGTAAT GAATGGAAAT ATAGACTTGT TTATTAATGA ATACTTAAAA ATGAATAAAA TAGTTTAA

Product

ProductprfB
DescriptionPeptide chain release factor 2 (RF2), recognizes UAA and UGA stop codons
Modifications75..77:ribosomal_frameshift
MLKLQEYKHS MEQMASNLEE LRVSLDIASL MKNIQINEEK MNQQDFWNDN EVAQRVLQEN KSLKETLEEY ESLKSLLEDI EVLIEIGLEE DDDSVERDIE KSIESMEEKL SEMKIKTLLN GEYDKNNAIL SINAGTGGLD AQDWAQMLLR MYIRWSESKG YKVKLLDIIS DPEAGIKTAT ILVEGTNAYG YLKSEKGVHR LVRISPFDPS GKRHTSFASI DVTPELDENI EVEINPSDLK IDTYRASGAG GQHVNTTDSA VRITHIPTGV VVQCQNERSQ HLNKDRAMRL LMAKLIELKE LEQKEKIEDI QGKYSQITWG SQIRSYVFQP YKLVKDHRTN AEFGNVDSVM NGNIDLFINE YLKMNKIV

Publications