Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200398"

Accession numberr200398 [export]
Locus nameprfB
Recode1 nameprfB_p_pro_ecol
DescriptionBacterial release factor 2
Recode statusValidated

Organism

Genomic classBacteria (Chromosome)
OrganismEscherichia coli [details]

Sequence

GenBank IDsAE000372.1
SequenceDNA of 1099 nucleotides [sequence]
OrganisationTrans/Interaction (1)

Recoding event

Event type+1 Frameshifting (position: 76)
DescriptionAutoregulation of RF2 biosynthesis.
ATGTTTGAAA TTAATCCGGT AAATAATCGC ATTCAGGACC TCACGGAACG CTCCGACGTT CTTAGGGGGT ATCTTTGACT ACGACGCCAA GAAAGAGCGT CTGGAAGAAG TAAACGCCGA GCTGGAACAG CCGGATGTCT GGAACGAACC CGAACGCGCA CAGGCGCTGG GTAAAGAGCG TTCCTCCCTC GAAGCCGTTG TCGACACCCT CGACCAAATG AAACAGGGGC TGGAAGATGT TTCTGGTCTG CTGGAACTGG CTGTAGAAGC TGACGACGAA GAAACCTTTA ACGAAGCCGT TGCTGAACTC GACGCCCTGG AAGAAAAACT GGCGCAGCTT GAGTTCCGCC GTATGTTCTC TGGCGAATAT GACAGCGCCG ACTGCTACCT CGATATTCAG GCGGGGTCTG GCGGTACGGA AGCACAGGAC TGGGCGAGCA TGCTTGAGCG TATGTATCTG CGCTGGGCAG AATCGCGTGG TTTCAAAACT GAAATCATCG AAGAGTCGGA AGGTGAAGTG GCGGGTATTA AATCCGTGAC GATCAAAATC TCCGGCGATT ACGCTTACGG CTGGCTGCGT ACAGAAACCG GCGTTCACCG CCTGGTGCGT AAAAGCCCGT TTGACTCCGG CGGTCGTCGC CACACGTCGT TCAGCTCCGC GTTTGTTTAT CCGGAAGTTG ATGATGATAT TGATATCGAA ATCAACCCGG CGGATCTGCG CATTGACGTT TATCGCACGT CCGGCGCGGG CGGTCAGCAC GTTAACCGTA CCGAATCTGC GGTGCGTATT ACCCACATCC CGACCGGGAT CGTGACCCAG TGCCAGAACG ACCGTTCCCA GCACAAGAAC AAAGATCAGG CCATGAAGCA GATGAAAGCG AAGCTTTATG AACTGGAGAT GCAGAAGAAA AATGCCGAGA AACAGGCGAT GGAAGATAAC AAATCCGACA TCGGCTGGGG CAGCCAGATT CGTTCTTATG TCCTTGATGA CTCCCGCATT AAAGATCTGC GCACCGGGGT AGAAACCCGC AACACGCAGG CCGTGCTGGA CGGCAGCCTG GATCAATTTA TCGAAGCAAG TTTGAAAGCA GGGTTATGA

Product

ProductprfB
DescriptionPeptide chain release factor 2 (RF2), recognizes UAA and UGA stop codons
Modifications75..77:ribosomal_frameshift
MFEINPVNNR IQDLTERSDV LRGYLDYDAK KERLEEVNAE LEQPDVWNEP ERAQALGKER SSLEAVVDTL DQMKQGLEDV SGLLELAVEA DDEETFNEAV AELDALEEKL AQLEFRRMFS GEYDSADCYL DIQAGSGGTE AQDWASMLER MYLRWAESRG FKTEIIEESE GEVAGIKSVT IKISGDYAYG WLRTETGVHR LVRKSPFDSG GRRHTSFSSA FVYPEVDDDI DIEINPADLR IDVYRTSGAG GQHVNRTESA VRITHIPTGI VTQCQNDRSQ HKNKDQAMKQ MKAKLYELEM QKKNAEKQAM EDNKSDIGWG SQIRSYVLDD SRIKDLRTGV ETRNTQAVLD GSLDQFIEAS LKAGL

Publications