Recode v. 2.0 / Database of translational recoding events.
Details for "r200403"
| Accession number | r200403 [export] |
| Locus name | prfB |
| Recode1 name | prfB_p_pro_mlot |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Mesorhizobium loti [details] |
Sequence
| GenBank IDs | AP002994.2 |
| Sequence | DNA of 1246 nucleotides [sequence] |
| Organisation | Trans/Interaction (1)
|
Recoding event
| Event type | +1 Frameshifting (position: 187) |
| Description | Autoregulation of RF2 biosynthesis. |
ATGCGGATCG CTGGGCTGGC TGGGGGCCGG CCCATTTCGC TTTACACATG GCGGCGCCGT CCCTATGTAT
CGCGCCGACC GAAGTGTCAC TTCAGCAACA GGACAAAATA CCAGGCCATG CGCGCGGAAA CGCAGAATAT
TGTCGACGAG ATCAGGCAGG CGATAACCCT GCTGAGGAGG CATCTTTGAC TGGGATCAGG CCATAAAGCG
GCTTGAATAC CTGAATGTGC GGGCCGAGGA CGCCAGCCTC TGGAACGAAC CGCTGGAAGC GCAGAAGCTG
ATGCGCGAGC GTCAGGGCCT CGAGGAAGGC ATCGCGGCGG TCAAGGGCCT GACCCAGGCG CTGGAAGACA
ATATCGGCCT GATCGAGCTC GGCGAGGAAG AGGGCGACGA GGGCGTCATC ACCGAGGCCG AAGCGGCGAT
CCGCTCGATG CAGGGCGAGG CCAAGGCCCG CCAGGTCGAA ACGCTGCTGT CGGGTGAAGC CGACGCCAAC
GACACCTATC TCGAAATCCA TGCCGGCGCC GGCGGCACCG AAAGCCAGGA CTGGGCCTCG ATGCTTTTGC
GCATGTACAC GCGCTGGGCC GAACGCCGCC GCTTCAAAGT CGAAGTGCTG GAAGTGCATG ACGGCGAAGA
GGCCGGCATC AAGTCCGCGA CGCTGATGAT CAAGGGCCAC AATGCCTATG GCTGGCTGAA GACTGAATCC
GGCGTCCATC GCCTGGTCCG CATTTCGCCC TATGACAGCA ATGCGCGCCG GCACACTTCC TTCGCCAGCG
TCTGGGTCTA TCCGGTCATC GACGACACGA TCGAGATCGA TGTTTCAGAA TCGGACGTGC GCATCGACAC
CTATCGCTCG TCGGGCTCTG GCGGCCAGCA CGTCAACACC ACCGATTCGG CTGTGCGCAT CACCCATATC
GCCACCGGCA TCGCGGTCGC CTGCCAGGCC GAGCGTTCGC AGCACAAGAA CCGGGCGAAG GCCTGGGAGA
TGCTGCGCTC GCGCCTTTAC GAGGAAGAGC TGAAGAAGCG TGAGGCCATC GCCAACGCCA CCGAAGCCTC
GAAGAGCGAC ATCGGCTGGG GCCACCAGAT CCGCTCCTAC GTGCTGCAGC CGTACCAGTT GGTGAAGGAT
CTGCGCACCG GCGTCGAAAG CACCAGCCCG TCGAGCGTGC TCGATGGCGA CCTCGACGAC TTCATGGAAG
CCTCGCTGTC GCAACGCATC GAAGGCGGCG CAGGCGAGGC CGTGGCGGAT CTGGAC
Product
| Product | prfB |
| Description | Peptide chain release factor 2 (RF2), recognizes UAA and UGA stop codons |
| Modifications | 186..188:ribosomal_frameshift |
MRIAGLAGGR PISLYTWRRR PYVSRRPKCH FSNRTKYQAM RAETQNIVDE IRQAITLLRR HLDWDQAIKR
LEYLNVRAED ASLWNEPLEA QKLMRERQGL EEGIAAVKGL TQALEDNIGL IELGEEEGDE GVITEAEAAI
RSMQGEAKAR QVETLLSGEA DANDTYLEIH AGAGGTESQD WASMLLRMYT RWAERRRFKV EVLEVHDGEE
AGIKSATLMI KGHNAYGWLK TESGVHRLVR ISPYDSNARR HTSFASVWVY PVIDDTIEID VSESDVRIDT
YRSSGSGGQH VNTTDSAVRI THIATGIAVA CQAERSQHKN RAKAWEMLRS RLYEEELKKR EAIANATEAS
KSDIGWGHQI RSYVLQPYQL VKDLRTGVES TSPSSVLDGD LDDFMEASLS QRIEGGAGEA VADLD
Publications
- Baranov PV, Gesteland RF, Atkins JF. (2002) Recoding: translational bifurcations in gene expression. Gene. 286(2):187-201. [abstract]
- Baranov PV, Gesteland RF, Atkins JF. (2002) Release factor 2 frameshifting sites in different bacteria. EMBO Rep. 3(4):373-377. [abstract]