Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200460"

Accession numberr200460 [export]
Locus namefdnA
Recode1 namefdhA_s_pro_dgig
Descriptionformate dehydrogenase
Recode statusProvisional

Organism

Genomic classBacteria (Chromosome)
OrganismDesulfovibrio gigas [details]

Sequence

GenBank IDsAJ318781.1
SequenceDNA of 3115 nucleotides [sequence]
OrganisationSECIS structure (1)

Recoding event

Event typeSelenocysteine (position: 653)
DescriptionSelenocysteine incorporation at UGA codon.
CGAGCCCGTT TGTTTGTCAC AGGGCGACTG GCGCCGTGCG CCATAAGCAT CCTGTTTACT GGTAATGGGA GGAAACATGC TGATCAAACG TCGTGCCTTT CTGAAGCTGA CGGCTGCGGG CGCAACGCTC TCGGCCTTCG GCGGGCTGGG GGTGGATCTC GCCCCGGCCA AGGCTCAGGC GGCGACCATG GCTTTGAAAA CCGTGGACGC CAAGCAGACG ACCTCTGTCT GCTGTTACTG CTCCGTCGGC TGCGGCCTTA TTGTGCACAC CGACAAAAAG ACCAACCGCG CCATCAACGT GGAAGGCGAT CCTGACCATC CCATCAATGA AGGTTCTCTG TGCGCCAAGG GTGCTTCCAC CTGGCAGCTG GCTGAGAACG AGCGCCGGCC GGCCAATCCG CTGTACCGCG CCCCCGGCTC CGACCAGTGG GAAGAAAAAA GCTGGGACTG GATGCTGGAC ACCATCGCCG AGCGCGTCGC CAAGACCCGC GAGGCAACCT TCGTCACCAA GAATGCCAAA GGGCAGGTGG TGAACCGCTG CGACGGCATC GCTTCCGTGG GCTCCGCCGC CATGGACAAC GAAGAGTGCT GGATCTATCA GGCGTGGCTG CGCAGCCTGG GCCTCTTCTA TATCGAACAT CAGGCCCGTA TTTGACACAG CGCAACTGTT GCGGCTCTGG CAGAGTCGTA CGGACGCGGC GCGATGACCA ATCACTGGAT CGACCTGAAG AACAGTGATG TAATTTTGAT GATGGGCAGC AACCCTGCCG AAAACCACCC CATTTCGTTC AAGTGGGTCA TGCGGGCCAA GGACAAGGGC GCCACGCTCA TCCATGTGGA CCCCCGCTAC ACCCGCACTT CCACCAAGTG CGACCTCTAC GCCCCCCTGC GCTCGGGCTC GGACATTGCC TTCCTCAACG GCATGACCAA GTACATCCTT GAAAAAGAAC TGTATTTCAA GGACTACGTG GTCAACTACA CCAACGCCTC CTTCATCGTG GGCGAAGGGT TTGCGTTTGA AGAAGGCCTC TTTGCCGGCT ACAACAAAGA GACCCGCAAG TACGACAAGT CCAAGTGGGG CTTTGAGCGC GACGAAAACG GCAACCCCAA GCGCGATGAG ACTCTCAAGC ACCCCCGCTG CGTCTTCCAG ATCATGAAGA AGCACTATGA GCGCTACGAT CTGGACAAGA TCAGCGCCAT CTGCGGCACG CCCAAGGAAC TCATCCTCAA GGTGTACGAC GCCTACTGCG CCACCGGCAA GCCGGACAAG GCCGGGACCA TCATGTACGC CATGGGCTGG ACACAGCACA CCGTGGGCGT GCAGAACATC CGCGCCATGT CCATCAACCA GCTGCTGCTG GGCAACATCG GCGTGGCTGG CGGCGGCGTG AACGCCCTGC GTGGCGAGGC CAACGTCCAG GGTTCCACGG ACCATGGCCT GCTCATGCAC ATTTACCCCG GCTACCTGGG CACGGCCCGC GCGTCCATCC CCACGTACGA GGAGTACACC AAAAAATTTA CTCCCGTCAG CAAGGACCCG CAAAGCGCCA ACTGGTGGAG CAACTTCCCC AAGTATTCCG CCAGTTACAT CAAGTCCATG TGGCCGGATG CAGATCTGAA CGAAGCCTAC GGCTACCTGC CCAAGGGCGA GGACGGCAAG GACTACTCCT GGCTGACCCT CTTTGACGAC ATGTTCCAGG GCAAAATCAA AGGCTTCTTT GCCTGGGGTC AGAACCCGGC GTGCTCCGGG GCCAACTCCA ACAAGACCCG CGAGGCACTG ACCAAGCTGG ACTGGATGGT CAACGTCAAC ATCTTTGACA ACGAGACCGG CTCCTTCTGG CGCGGCCCGG ACATGGATCC CAAGAAGATC AAGACTGAGG TCTTCTTCCT GCCCTGCGCC GTGGCCATCG AAAAAGAAGG CTCCATCTCC AACTCCGGCC GCTGGATGCA GTGGCGCTAT GTGGGTCCTG AACCGCGCAA GAACGCCATC CCCGACGGCG ACCTCATCGT CGAGCTGGCC AAACGCGTGC AGAAGCTCCT GGCGAAGACC CCCGGCAAGC TGGCCGCCCC CGTGACCAAG CTCAAGACCG ACTACTGGGT CAACGACCAT GGCCACTTCG ATCCGCACAA GATCGCCAAG CTCATCAACG GCTTCGCCCT CAAGGACTTC AAGGTCGGCG ACGTGGAGTA CAAGGCCGGC CAGCAGATCG CCACCTTTGG CCACCTGCAG GCAGACGGCT CCACCACCTC CGGCTGCTGG ATCTACACTG GTTCTTACAC GGAAAAGGGC AACATGGCCG CCCGCCGCGA CAAGACCCAG ACCGACATGC AAGCCAAGAT CGGCCTGTAC CCCGGCTGGA CCTGGGCCTG GCCGGTGAAC CGCCGCATCA TCTACAACCG CGCCTCCGTG GACCTCAACG GCAAGCCCTA CGCGCCCGAA AAGGCCGTGG TGGAATGGAA CGCGGCGGAA AAGAAATGGG TGGGCGACGT CCCCGACGGT CCCTGGCCGC CTCAGGCAGA CAAGGAAAAG GGCAAGCGTG CCTTCATCAT GAAGCCCGAA GGCTATGCCT ACCTCTACGG CCCCGGCCGT GAAGACGGCC CCCTGCCCGA GTACTATGAA CCCATGGAAT GCCCGGTCAT CGAGCATCCC TTCTCCAAGA CCCTGCACAA CCCCACGGCC CTGCACTTCG CCACCGAAGA AAAGGCCGTG TGCGATCCGC GGTACCCCTT CATCTGCTCC ACCTACCGCG TGACCGAGCA CTGGCAGACC GGCCTGATGA CCCGCAACAC CCCCTGGCTG CTCGAAGCCG AACCGCAGAT GTTCTGCGAA ATGAGCGAAG AGCTGGCCAC CTTGCGCGGC ATCAAAAACG GCGACAAGGT CATCCTCGAA AGCGTGCGCG GCAAGCTCTG GGCCAAGGCC ATCATCACCA AGCGCATCAA GCCCTTCGCC ATTCAGGGGC AGCAGGTGCA CATGGTGGGC ATCCCCTGGC ATTACGGCTG GTCCTTCCCC AAGAATGGTG GCGATGCAGC CAACATTCTT ACGCCGTCCG TTGGCGACCC CAACACCGGC ATCCCGGAAA CCAAAGCCTT CATGGTCAAC GTGACCAAAG CCTAA

Product

ProductfdhA
DescriptionFormate dehydrogenase alpha subunit
Modifications653..655,aa:Sec
MLIKRRAFLK LTAAGATLSA FGGLGVDLAP AKAQAATMAL KTVDAKQTTS VCCYCSVGCG LIVHTDKKTN RAINVEGDPD HPINEGSLCA KGASTWQLAE NERRPANPLY RAPGSDQWEE KSWDWMLDTI AERVAKTREA TFVTKNAKGQ VVNRCDGIAS VGSAAMDNEE CWIYQAWLRS LGLFYIEHQA RIUHSATVAA LAESYGRGAM TNHWIDLKNS DVILMMGSNP AENHPISFKW VMRAKDKGAT LIHVDPRYTR TSTKCDLYAP LRSGSDIAFL NGMTKYILEK ELYFKDYVVN YTNASFIVGE GFAFEEGLFA GYNKETRKYD KSKWGFERDE NGNPKRDETL KHPRCVFQIM KKHYERYDLD KISAICGTPK ELILKVYDAY CATGKPDKAG TIMYAMGWTQ HTVGVQNIRA MSINQLLLGN IGVAGGGVNA LRGEANVQGS TDHGLLMHIY PGYLGTARAS IPTYEEYTKK FTPVSKDPQS ANWWSNFPKY SASYIKSMWP DADLNEAYGY LPKGEDGKDY SWLTLFDDMF QGKIKGFFAW GQNPACSGAN SNKTREALTK LDWMVNVNIF DNETGSFWRG PDMDPKKIKT EVFFLPCAVA IEKEGSISNS GRWMQWRYVG PEPRKNAIPD GDLIVELAKR VQKLLAKTPG KLAAPVTKLK TDYWVNDHGH FDPHKIAKLI NGFALKDFKV GDVEYKAGQQ IATFGHLQAD GSTTSGCWIY TGSYTEKGNM AARRDKTQTD MQAKIGLYPG WTWAWPVNRR IIYNRASVDL NGKPYAPEKA VVEWNAAEKK WVGDVPDGPW PPQADKEKGK RAFIMKPEGY AYLYGPGRED GPLPEYYEPM ECPVIEHPFS KTLHNPTALH FATEEKAVCD PRYPFICSTY RVTEHWQTGL MTRNTPWLLE AEPQMFCEMS EELATLRGIK NGDKVILESV RGKLWAKAII TKRIKPFAIQ GQQVHMVGIP WHYGWSFPKN GGDAANILTP SVGDPNTGIP ETKAFMVNVT KA

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