Recode v. 2.0 / Database of translational recoding events.
Details for "r200465"
| Accession number | r200465 [export] |
| Locus name | null |
| Recode1 name | fdh_s_pro_hhep |
| Description | formate dehydrogenase |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Helicobacter hepaticus [details] |
Sequence
Recoding event
| Event type | Selenocysteine (position: 553) |
| Description | Selenocysteine incorporation at UGA codon. |
ATGAGCGAGG TAAATGATAG ACGCAATGCT CGGCGCTCAT TCCTCAAACT CTCTGCATTG GCTTCTGTGG
CTGGTGTGAG CAGTGCTTTG GGAAATGAGG GGGAAAAAGT GCTTAGAAAA GCAAGTGAGG CAGAGTTGAA
GGAAAAATAT CCACAATCTC AAAAAATCAA AACTATTTGC ACACATTGTT CGGTGGGTTG TGGTGTGATT
GCTGAAGTGC AAGATGGTGT ATGGGTGCGC CAAGAAGTGG CTCAAGACCA CCCGATTTCT CAAGGCGGAC
ATTGCTGCAA AGGTGCAGAT TTGATTGATA GAGCAAGAAG CGAAACAAGA TTACGCTATC CTTTGCAAAA
GCAAAATGGG CAATGGACAA GGCTTAAATA TGATGAGGCA ATGGATAAAA TTGCTACACA GCTTAAACAA
ATTAGAGAAG AAAGCGGTCC TGATGCAGTG ATGTTTTTAG GAAGCGCGAA ATGTTCTAAT GAGCAAAGCT
ATTATATTCG TAAGTTTGCA GCATTTTTTG GGACAAATAA TATAGACCAT TGTGCTAGAG TTTGACACAG
CCCAACAGTC GCCGGTGTGG CGAATACATT CGGGTATGGT GGTATGACAA ATCATCTTGG CGATATGATG
TTCTCAAAAT ATATTTTAGT CATTGGAGCA AATCCAGCGG TAAATCACCC TGTGTCAATG GTGCATATTT
TGCGAGCTAA AGAGCAAGGA GCAAAACTTG TATGTATTGA TCCACGATTT ACAAAAACTG CAGCAAAATG
TGATGAATTC CATAGAATCC GCAGTGGGAC AGATATAGCC TTTGCTTATG GTTTGCTCAA TCACATCATT
GCTAAAAAGC TTTATGATGA GCAATATCTC AAAGAGAGAG TTTATGGCTA TGAGGATATT ATTAAAGAAG
CACAAAAATT CTCTCCAGAA GTGGCAGCAG ATATTTGTGG AATCCCAGCT GATGAAATTA GGCATATTGC
CGAAGAAATG GCAGCTGCAA AACCTGCAAG CTTAATTTGG AATCAAGGGC TTACACAACA TACGATTGGC
ACAAGCAATA CAAGAATTAT GCCTATTTTG CAAATGTTTT TAGGCAACAT TGGGAAAAAT GGCGGAGGCG
TGAATATCTT AAGGGGACAC GATAATGTGC AAGGAGCTTC GGATATGAAC AATCTCGCAG ATTCTCTACC
GGGTTATTAT GGGCTTGGAG AGCCAGCTTG GCGACATTTT TGTAAGCATT GGGGCGTTGA GTATGAGTGG
ATGTTAGGAC GTTTCAAAGA TGCAGAAATG ATGGGTAAAA CCGGTTTTGC ACATTCTACT TGGAAATTTG
GTGTATTAGA TGAAGAAAAT GCTGCAAATA ATGGTGGCAC AAAGCTACGT GCTTTAGTTG TAATTGGTTC
AGGTATGACC ACAGTTTCTT TGCTTGATTT GCAAAAAAAA GCAATGGATA TGCTAGATTT GGTGGTGTTT
GTAGATCCTT ATGTTAATGA CTTGGCAATT TATAGTGATA GAAGCGATAA TCTCTTTATG CTTCCAGCGG
CTTCTCAAAT GGAAACAAGT GGTTCTGTGG CAGCGACAAA TCGTAGCTAT CAATGGCGTT CTAAAGTAAT
GGAACCGCTT TTTGAATGCC GTCCTGATGA GGAGTTTCTC TTTGGTTTGG CTGAACGATT AGGATTCTTG
AAAGAATTGC AATGGCGACT TTATGATATA GCAAAATCAA AAGGACGGGA GCAATTTGTT TGGCCTGAAG
ATGCAACTAC TGAACTTACG CAAAGTATTC GTAGCATTGG TTTGCAAGGT ATGAGTCCAG AGAGACTAAA
AGCCCACCAA GAAAATTGGC ATTTATTTGA TAAAGTAACA CTGGAAGGCA CAGGAGAGTT TAAGGGAGAT
TATTACGGGC TGCCTTGGCC TTGTTGGAGT GATAAGCACC CGGGCACACC TGTAATGTAT AATGATACTA
TTCCTGTTAT GCGTGGAGGT ATGGGATTCC GCGTAAATTG GGGTGTTACA AGCCCAGATG GGCAAAGTAT
GCTTACAAAT AGAAGCTTGC CAAATGCTAA ACATATCGGT GGATACGCTC CTGTAACTGC AGAAAATGCT
GAATCTTTGG GGATTAGTCT AAGTAGCGAG GAGAAAAATG CCATTGAGGG AAGCACTTTT GCTCTAGGTA
TAGGGAATAA TATTTTGGTA GAAAAAGCAT TAGAGGCAGG ATTATGCCCT TATGGAAATG GTAAAGCAAG
GGCGAATGTA TGGAATTGGT ATGATAAGAT TCCACTCCAT CGTGAGCCCC TCCATTCTGT GCGTGGAGAT
TTGGTAGATA AATATCCAAG CTTCCCAGAT AAACCAAATC TTTTCCGTGC TAATGTTAAG TATATTTCGC
GTCAAAAGGA AAAAGATTGG GTAAAAGAGT TCCCTATCAA TATGTTAAGC GGACGTTTAG TAGCTCATAT
GGGAACAGGT GCAGAAACTC GTAGTGCGAA ATATTTAGCT GAAGTAGAGG GAGAAATGTT TGTGGAGATT
CACCCAAATA AAGCTGCAGA GCTTAAAGTA AAAAATGGTG ATTTGGTATG GATATATGGA ACAAATGGTT
GCAAAATTCT TGTGCCTGCA AAACTCTCTG TTCGTGTAGA TGAAAATAGC ATTTGGTTGC CTCAAAACTT
TTCAGGTATG GATCAAGGAG AATCGCGACT TGATAAATAT CCAGAGGGCA CAAAACCTTA TGCTATTGGT
GAATCAGCAA ATATGATTAG CAGTTATGGG TATGATTATA ACTCTGCTTG TCCGGAAACA AAATGCGGTC
TATGCCGAAT TGAAAAAGCG TAA
Product
| Product | fdh |
| Description | Formate dehydrogenase |
| Modifications | 553..555,aa:Sec |
MSEVNDRRNA RRSFLKLSAL ASVAGVSSAL GNEGEKVLRK ASEAELKEKY PQSQKIKTIC THCSVGCGVI
AEVQDGVWVR QEVAQDHPIS QGGHCCKGAD LIDRARSETR LRYPLQKQNG QWTRLKYDEA MDKIATQLKQ
IREESGPDAV MFLGSAKCSN EQSYYIRKFA AFFGTNNIDH CARVUHSPTV AGVANTFGYG GMTNHLGDMM
FSKYILVIGA NPAVNHPVSM VHILRAKEQG AKLVCIDPRF TKTAAKCDEF HRIRSGTDIA FAYGLLNHII
AKKLYDEQYL KERVYGYEDI IKEAQKFSPE VAADICGIPA DEIRHIAEEM AAAKPASLIW NQGLTQHTIG
TSNTRIMPIL QMFLGNIGKN GGGVNILRGH DNVQGASDMN NLADSLPGYY GLGEPAWRHF CKHWGVEYEW
MLGRFKDAEM MGKTGFAHST WKFGVLDEEN AANNGGTKLR ALVVIGSGMT TVSLLDLQKK AMDMLDLVVF
VDPYVNDLAI YSDRSDNLFM LPAASQMETS GSVAATNRSY QWRSKVMEPL FECRPDEEFL FGLAERLGFL
KELQWRLYDI AKSKGREQFV WPEDATTELT QSIRSIGLQG MSPERLKAHQ ENWHLFDKVT LEGTGEFKGD
YYGLPWPCWS DKHPGTPVMY NDTIPVMRGG MGFRVNWGVT SPDGQSMLTN RSLPNAKHIG GYAPVTAENA
ESLGISLSSE EKNAIEGSTF ALGIGNNILV EKALEAGLCP YGNGKARANV WNWYDKIPLH REPLHSVRGD
LVDKYPSFPD KPNLFRANVK YISRQKEKDW VKEFPINMLS GRLVAHMGTG AETRSAKYLA EVEGEMFVEI
HPNKAAELKV KNGDLVWIYG TNGCKILVPA KLSVRVDENS IWLPQNFSGM DQGESRLDKY PEGTKPYAIG
ESANMISSYG YDYNSACPET KCGLCRIEKA
Publication
- Suerbaum S, Josenhans C, Sterzenbach T, Drescher B, Brandt P, Bell M, Droge M, Fartmann B, Fischer HP, Ge Z, Horster A, Holland R, Klein K, Konig J, Macko L, Mendz GL, Nyakatura G, Schauer DB, Shen Z, Weber J, Frosch M, Fox JG. (2003) The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus. Proc Natl Acad Sci U S A. 100(13):7901-7906. [abstract]