Recode v. 2.0 / Database of translational recoding events.
Details for "r200466"
| Accession number | r200466 [export] |
| Locus name | null |
| Recode1 name | fdh_s_pro_mavi |
| Description | formate dehydrogenase |
| Recode status | Provisional |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Mycobacterium avium [details] |
Sequence
Recoding event
| Event type | Selenocysteine (position: 580) |
| Description | Selenocysteine incorporation at UGA codon. |
ATGGCCCCGA AAAAAGCCCT GAGCAAGGTG TTTCTGGAAT GGCCCGTGCT GCGCCAGGTG CGCTCGACGG
ACAAACTCGG CCGCGGCTCG GCGGTGACCT CCAAACACAC CCGCGCGCTG GCGCCGCGCA CCGCCACCGC
CGACCGGGTG GTGCAGAGCG TGTGCCCGTA CTGCGCCGTC GGCTGCGGCC AGCGGGTGTA CGTCAAGGAC
GAGCGGGTCG TGGCGATCGA GGGCGACCCC GATTCGCCGA TCTCGCGAGG ACGCTTGTGC CCCAAGGGAT
CTGCGAGCGA GCAGTTGGTG AACTCGCCGG GGCGGCAGCT GCAGGTGCTC TACCGCGCGC CGCGCGCCAC
CGAATGGCAG CCGCTGCAGC TGGACACCGC GATCGACATG ATCGCCGACC GCTTCGTGGA ATCGCGCCGC
AACAGCTGGC AGGACATCGA CAAGAAGGGC AACCTGCTGC GCCGCACCAT GGGCATCGCC GCGCTGGGCG
GCGCGACCCT GGACAACGAA GAGAACTACC TCATCAAGAA GCTCTTCACC GCCGCGGGCG CCATTCAGAT
CGAGAACCAA GCCCGTATTT GACACAGTGC CACGGTTCCC GGTCTGGGAG CCTCCTTCGG GCGCGGCGGC
GCCACCCAAT CACTGCAAGA CATGGCCAAT GCCGACTGCA TCGTCATCCA GGGCTCCAAC ATGGCCGAGT
GTCACCCGGT CGGCTTCCAA TGGGTGGAAG AGGCCCGGGC CCGCGGCGCG CGGGTGATCC ACGTCGACCC
GCGATTCACC CGCACCTCGG CGGTCTCCGA CCGGCACATC CCGATCCGGG CCGGTTCGGA CGTGGTGCTG
CTCGGCGCGC TGATCAACCA CGTGCTCACC AACGACCTGT GGTTCTCCGA ATACGTCGTC GCGTACACCA
ACGCCGCCAC CATCATCAAC GAAAACTTCC GCGACACCGA GGATCTCGGC GGCCTGTTCT CCGGGTTCGA
TCCCGAGACC GGGCAGTACG ACACGTCGAG TTGGGCCTAC GAAGAGGAGG ACGACGGCCG GTCCGGAGGC
GAAATCGAGT CCCCCGGCGG CGGTCACACC CACGGCGCCA CCGCCACCCA CAGCGCCGCC GGTGACGAGC
ACGGCAGCGG CGGCCCGCCG CTGGCGCACG CCAGGGTGCG CCGCGACGAG ACCCTGCAGC ACCCGCGGAC
CGTCTTCCAG ATCCTCAAGC GGCACTACGC CCGCTACACG CCGGAGATGG TCAAAGACGT GTGCGGGATC
AGCCGGGAGG ACTTCGACTA CCTGGCCCGC TCCATCGTGG AGAACTCCGG GCGCGAGCGC ACCACCTGCT
TCGCCTACGC CGTCGGCTGG ACGCAGCACA CCCTGGGCGC CCAATTCATC CGCACCGCAA CGATTTTGCA
GCTGCTGATG GGCAACGTCG GGCGCCCGGG CAGCGGCATC ATGGCGCTGC GCGGCCACGC CACCATCCAG
GGCTCCACCG ACATCCCCAC GCTGTTCAAC CTGCTGCCCG GCTATCTGCC GATGCCCAAG GCGGGCGTGC
ACGACACCCT GGCCGACTAC CTGGCCGCGG TGGGATCCAA GAAACAGAAG GGCTTCTGGG CCAACGCCGA
CGCCTACACC GTCAGCCTGC TCAAGGCGTG GTGGGGCGAG GCGGCCACCG CGGACAACGA CTGGGCCTAC
GACTACCTGC CCCGACTGAC CGGCCCGCAC GGCACCTACC AGACCGTGAT GGGCATGCTG GCCGACGAGG
TCGAGGGCTA CTTCCTGCTC GGCCAGAACC CCGCGGTCGG TTCGGCGCAC GGCCGGATGC AACGGCTGGG
CATGTCGCAT CTCAAGTGGC TGGTGGTGCG CGACTTCAAC CTGATCGAAT CGGCCACCTG GTGGAAGGAC
GGGCCCGAAA TCGCCTCCGG GGAACTGAAA ACCGAGGAGA TCGAGACCGA GGTGTTCTTC CTGCCCGCCG
CCACGCACGT GGAGAAGGCC GGATCCTTCA CGCAGACACA ACGATTGGTG CAGTGGCGGC ACCAGGCCGT
CGAGCCGCCG GGACAGTGCC AGAGCGAACT GCAGTTCTTC TACGAACTCG GCAAGCGGAT CCGGCAACGG
CTGGCTGGCT CGACCGACGA GCGGGACCGG CCGCTGCTGG ATCTGACCTG GGACTACCCC ACCGACGAGC
ACGGCGACCC GGACGGGGAG GCGGTGCTGG CCGAGATCAA CGGATACCGG GTCGGCGAGC CCGCGGACCC
GTTGGCGTCC TACACCGAGC TGCGCGCCGA CGGGTCGACC GCCGCCGGCT GCTGGATCTA CACCGGGGTG
TACGCCAACG CCGTCAACCA GGCCGCGCGC CGGGTGCCCA ACGGCGGTGC GTCACCGAGC CAATCGGAGT
GGGGCTGGGC GTGGCCCGCC GACCGGCGGG TGCTCTACAA CCGCGCGTCG GCCGACCCGG ACGGCAAACC
GTGGAGCGAA CGCAAGCGCT ACATCTGGTG GGATCCCGAC CAGCGACGCT GGGTCGGCTA CGACGTGCCG
GACTTCGTGG TCGACCGAGC CCCGGGCGCC CGGCCCGACC CCGAGCTGGG CGGCCCCGAC GCGCTGGCCG
GCGACGACCC GTTCATCATG CAGGCCGACG GCAAGGGCTG GCTGTTCGCG CCCAAGGGTG TGGTCGACGG
GCCGCTGCCC ACGCACTACG AGCCGCAGGA ATCGCCGGTG GCCAACGCGC TGTATCCCCA GCAGCGCAAC
CCGGCGCGAA TCACCTTCGC GCGCAAGGAC AATCTCAGCG CACCCAGCGC CGGCGAGCCG GGCTCCGACG
TCTACCCGTA CGTGTTCACC ACCTACCGGC TCACCGAGCA TCACACCGCC GGCGGCATGA GCCGGTGGCT
GCCCTACCTC TCGGAG
Product
| Product | fdh |
| Description | Formate dehydrogenase |
| Modifications | 580..582,aa:Sec |
MAPKKALSKV FLEWPVLRQV RSTDKLGRGS AVTSKHTRAL APRTATADRV VQSVCPYCAV GCGQRVYVKD
ERVVAIEGDP DSPISRGRLC PKGSASEQLV NSPGRQLQVL YRAPRATEWQ PLQLDTAIDM IADRFVESRR
NSWQDIDKKG NLLRRTMGIA ALGGATLDNE ENYLIKKLFT AAGAIQIENQ ARIUHSATVP GLGASFGRGG
ATQSLQDMAN ADCIVIQGSN MAECHPVGFQ WVEEARARGA RVIHVDPRFT RTSAVSDRHI PIRAGSDVVL
LGALINHVLT NDLWFSEYVV AYTNAATIIN ENFRDTEDLG GLFSGFDPET GQYDTSSWAY EEEDDGRSGG
EIESPGGGHT HGATATHSAA GDEHGSGGPP LAHARVRRDE TLQHPRTVFQ ILKRHYARYT PEMVKDVCGI
SREDFDYLAR SIVENSGRER TTCFAYAVGW TQHTLGAQFI RTATILQLLM GNVGRPGSGI MALRGHATIQ
GSTDIPTLFN LLPGYLPMPK AGVHDTLADY LAAVGSKKQK GFWANADAYT VSLLKAWWGE AATADNDWAY
DYLPRLTGPH GTYQTVMGML ADEVEGYFLL GQNPAVGSAH GRMQRLGMSH LKWLVVRDFN LIESATWWKD
GPEIASGELK TEEIETEVFF LPAATHVEKA GSFTQTQRLV QWRHQAVEPP GQCQSELQFF YELGKRIRQR
LAGSTDERDR PLLDLTWDYP TDEHGDPDGE AVLAEINGYR VGEPADPLAS YTELRADGST AAGCWIYTGV
YANAVNQAAR RVPNGGASPS QSEWGWAWPA DRRVLYNRAS ADPDGKPWSE RKRYIWWDPD QRRWVGYDVP
DFVVDRAPGA RPDPELGGPD ALAGDDPFIM QADGKGWLFA PKGVVDGPLP THYEPQESPV ANALYPQQRN
PARITFARKD NLSAPSAGEP GSDVYPYVFT TYRLTEHHTA GGMSRWLPYL S
Publication
- Li L, Bannantine JP, Zhang Q, Amonsin A, May BJ, Alt D, Banerji N, Kanjilal S, Kapur V. (2005) The complete genome sequence of Mycobacterium avium subspecies paratuberculosis. Proc Natl Acad Sci U S A. 102(35):12344-12349. [abstract]