Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200497"

Accession numberr200497 [export]
Locus nameprdB
Recode1 nameprdB_s_pro_csti
Descriptionproline reductase
Recode statusValidated

Organism

Genomic classBacteria (Chromosome)
OrganismClostridium sticklandii [details]

Sequence

GenBank IDsAJ130879.2
SequenceDNA of 729 nucleotides [sequence]
OrganisationSECIS structure (1)

Recoding event

Event typeSelenocysteine (position: 454)
DescriptionSelenocysteine incorporation at UGA codon.
ATGTCTGATT TGACTGTAGT AAAAGGATTA CAATCTGAAA TTTATGTACC TATTACACCA CCACCAGTGT GGACACCAGT AACAAAAGAA TTAAAAGACA TGACTGTTGC GCTTGTTACA GCAGCAGGAG TTCATATGAA AGCTGACAAG AGATTTAACC TAGCAGGAGA CTTTTCTTTC AGAGTTATTC CAGGAGATGC ATCTGTAAAT GATATGATGG TATCTCACGG AGGTTATGAT AATGGAGATG TAAACAAAGA CATCAACTGT ATGTTCCCAA TAGATCCAAT GAGAACATTA GCTAAAGAAG GATTCATTAA AGCTCTAGCT CCTATAAACA TAGGATTCAT GGGTGGTGGT GGAGACCAAA AGAAATTCTC AGAAGAAACT GGTCCTGAGA TAGCTAGACA ACTTAAAGAA GAAGGCGTAG ATGCAGTTCT TCTAACAGCT GGCTGAGGTA CCTGCCATCG TTCTGCAGTT ATAGTGCAGA GAGCGATTGA GGAATCGGGT ATTCCTACAA TAATTATAGC AGCATTACCA CCAGTTGTAA GACAAAATGG AACTCCAAGA GCTGTTGCTC CACTAGTACC TATGGGTGCT AATGCTGGAG AGCCTAATAA TCCAGAAATG CAAAAAGCTA TTTGTACAGA TTCTCTAAAG CAATTAGTTG AGATTCCTAG TGCAGGAAAA ATAGTACCAC TACCTTACGA GTACGTAGCA AAGGTTTAA

Product

ProductprdB
Descriptioncatalyzes the reductive ring cleavage of D-proline to 5-aminovalerate
Modifications454..456,aa:Sec
MSDLTVVKGL QSEIYVPITP PPVWTPVTKE LKDMTVALVT AAGVHMKADK RFNLAGDFSF RVIPGDASVN DMMVSHGGYD NGDVNKDINC MFPIDPMRTL AKEGFIKALA PINIGFMGGG GDQKKFSEET GPEIARQLKE EGVDAVLLTA GUGTCHRSAV IVQRAIEESG IPTIIIAALP PVVRQNGTPR AVAPLVPMGA NAGEPNNPEM QKAICTDSLK QLVEIPSAGK IVPLPYEYVA KV

Publication