Recode v. 2.0 / Database of translational recoding events.
Details for "r200518"
| Accession number | r200518 [export] |
| Locus name | orf1a-orf1b |
| Recode1 name | pol_m_vir_ldv |
| Description | viral or mobile polyprotein |
| Recode status | Validated |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Lactate dehydrogenase-elevating virus [details] |
| Acronym | LDV |
Sequence
| GenBank IDs | NC_002534 |
| Sequence | RNA of 10913 nucleotides [sequence] |
| Organisation | Pseudoknot structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)
|
Recoding event
| Event type | -1 Frameshifting (position: 6,675) |
| Description | approx. 13% frameshifting with reporter gene in S. cerevisiae. This is the CDS part of the sequence. |
| Models | HMM |
ATGCAGTCGG GATTCGACCG GTGTTTGTGT ACCCCCAATG CTAGAGTGTT TTGGGAGCGT GGGCAAGTAT
ACTGCACACG GTGCCTGGCG GCACGGCCCC TACTCCCCTT GAGCCAGCAA CATCCCCGGC TGGGCGCCCT
TGGGTTGTTC TACAGGCCAG CTTCCCCGCT ATCGTGGGAG GCGCCAGTGA CCTACCCTAC CAAGGAGTGC
CGGCCGGGTG GCATGTGCTG GCTTTCGAGC ATCTACCCGA TAGCTCGAAT GACTTCTGGT AATCACAACT
TTCAGGCTAG ATTGAATTTC ATCGCCTCWG TTGTGTACCG AGATGGAAAA CTGACGAGCA AACATCTTGA
GGAAGACTTT GAGGTTTATT CACGTGGATG CCGGTGGTAC CCAATCACCG GACCCGTACC AGGTATTGCG
CTGTATGCAA ATGCGGTGCA TGTGAGTGAT GAGTCATTCC CTGGTGCCAC GCACGTTTTG AGTAACCTCC
CCTTGCCACA ACAACCGCTC CGCAAAGGTY TATGTCCTTT TGCTGATGCA CGAGCGAATG TGTGGCGTTA
CAAAGGTAAT ACTGTGTTTG TTTCACCACA GGGTTACCTG TGGACAACAG GCTCAAATGA TTCTGTCCCA
GAACCATGGG GTGAGGATCG CAGGCTGTGT GAAAAGATCA TTTCTTCACT TCCTGCAGAC CACCTCGTCA
AGATTAATTT TTCCAACTAC CCGTTTGATT ATTCCTTCAC CGGCGGTGAC GGAGCGGGCT TTGTTGTGTT
CCCGTGCAAG GAGCGCGACA CAAAGTTTTC CAAGTGTTGG GAAAAGATTT TTGAAGACCA TAGTGGCTGG
ATGGCCGCCT GCGAGGAAGC GGATCTTGCC GACCGGATGG GTTACCGGAC CCCTGCTGGA GTTGCCGGTC
CCTATTTGGC TCGTAGATTA CAGGTCCGCG GATTGCGAGC TGTTGTCAAG CCTGAAAACA ATGACTACAT
TGTGTGGGCA CTGGGTGTGC CGGAGTCCTA CATAAGGCAT GTCTCACGGG CTGGTGAGCC TGTTGAAGAA
TTTTTTGTGA AGGTGGGTGA ATTCTCCATC GTTTCAAACT GTGTAGTCAC CCCCCACCCC AAATTTAGAT
TCCAAACTAG AAAATACTAT GGGTACTCTC CCCCAGGGGA TGGAGCTTGT GGCCTTCATT GCATTTCGGC
TATGCTAAAT GACATCTTCG GTGATTCATT CACCACGAGA TTGGGTAAGT GTAGCCGAGA CAGCAGCGAG
TGGCTTTCTG ATCAAGACTT GTATCAACTG GTGATGACGG CCAACTTGCC AGCTACCATT GGCCATTGCC
CGTCTGCTAT TTACAAACTG GATTGTGTGA ATCAGCACTG GACTGTGACT AAAAGAAAAG GTGACAGGGC
CGTCGGAAGA CTGGCTCCTG ACTGTCTTCG TGGCGTGTGT GGCGAATGCG AAATGGGTAT CCACATCGGC
GCTGACACTG ATTTGTCGCC CATTGTGGAG CTCCAACTAG CACAAGATGT TTCGCCTCGG CCTGGAGCCT
TATTGTGGTT CTTGGAACTT CACGAACTCT GTGTTGTGGA CGACGACTTC GCCCACGCGA TAGCTAGAGC
AGGTGAGGAG TACAGGAGAG CTATGGGTAT CCCCAGAGAT GACTGGGTAA TTCTAGCAGA ACTTATGACT
GAAAATTGCC GAACTCGGCA TCAAGTGCTG GAAAAACTTC AGCGAGGACT TCAGCTTCAG GCTTCGTCCA
GACCCAGTTC TCCTGCATCA GTGAGCCCGG CTAGCAGTGT TGATCTCAGC GCTGCTGGCT TGTTGCTGAG
CGGTACTGAG TCTGACAAAG AAGCTGTTGT AGCTGTGAAC GATGGTTGCT ACACAGTACT TGGCTTTGAC
AAGAACGAGG CGACCAAGTC TGAGCAAGAT CTAGCAACGG ACTTGTTTTG CGACCTTGTG AAACCCATGG
AGACTTCCAC CACCAAACTT GAATCAAGAA AGATTTTGGA GGCTGCTGCA AAAGCCCTAG AGAGCTGCAA
GCCAAAGCGC AAGCGCAGCA GAAAGAAGAA GACCCGTACC CCTTCCCCAA CATGCTCGGT GGATGCTGCT
GTAGCGGAAC CTACCAGTGT GAATTCGTTG GGGAATCAGG ATACAAGGGA AACATGTGCC TCAGAGAAAA
AGGCTGAGAA GTGCCCCACG CCAACGCCGC CCCCGCGGCC AAAGCGTGCA GCACTGAAGA ATTCAAACTC
AGGGTGTGTT CTGAAGGACA TCATCTGGAA CCAGACTGGG CCTGGTGTGA AGTGTCTGAC CATCGTCGAA
GATGTTAGGG CATTCCTAAA GGGCATCACC CCACCGGGCG GTGTGCTGAG CACTAGATCC CGGATTACAA
AACACATTGT GGACCACTTC CACAGCATTT GTGAGCAAAC CCCAGAACTT GTTCTTGCTC ACGCAGAACA
CCAGGCAAAA AATCTGCATG AGTTACTCGC GAGTGAAACA GCAAAACTTA TCCTTGGGAT TGGAGAGGAC
CCCCTCAAAA AGCTGGTGGG CTCGCAGCGC TCCTTACCCA GGCGACTTGG GTTTGGCGCC TGGTTGGGCG
GCCAACAGAA GACTTCTGGC GGCTGTGGCG AGAGAGAATT TAAGGACGTT GGGCGAAAGA GCGGCGCCGA
GCGCACACCG TCCAAGCGGG ATCTAGGAGT TAGCCTTGGC GACCAGCTTT CACAAGACGG GGCGCGGAGG
TTGAGTTCAT CCACTGCTTG TGAGATCAAG GAGAGCGTAC CACCTATAAT AGATTCCGGT GGCGGTTTGA
GTCAAAAGTT TATGGCTTGG TTGAATCACC AGGTTTTTGT CTTGTCCTCC CATCTCCTTG CCGTGTGGTC
TTTCATCTTT GGCTCTCGCC AAGTGCTTGG TGTTTTTGAT TATGTTTACA CATTGTTTTG TTTATGCTGT
GTGTTGTTGT GTTTTTACCT TCCAGCCATC GGGTTCATGA CCCTCGTTGG TTGTGTTTTT GGGTCTCCTT
GGAGAGTTCG CCTATCTGTT TTTTCTGTTT GGCTTTGTGT TGCAGTGGTG GTGTTCCAGG AGGTCCTGCC
TGAACCTGGG GCTGTCTGTA CCAGTGCTTC GGCTGAGCGC GCGGCAGCTC TTGAGCGCTA TACCAGTAAT
GGTGTTCACC GACCTGTTAA CCATCTTAGT GTTGGTCTGG TGGGCACCGT GGCAGGATTT GTTGCTCGCT
CGGTGGGGGG CCCACGGCGT TACTGGTTTT ATTTCCTTCG CCTTATGGTG TTATTGGACT TGGGACTTGT
GTTTCTTGCC GTGGCTTTGC GCGGGAGTTG CAAAAAGTGC TTCTGCAAGT GTGTGAGAAC AGCTTCACAT
GAGGTTCAGC TGCGTGTGTT CCCATCAACT AAGGTTGCAA GAACTACCTT GGAGGCAATC TGTGACATGT
ACAGCGCACC TCGAGTTGAT CCCATCTTCA TCGCAACTGG CGTGAGGGGT TGTTGGACTG GGAGTGTTAG
CCCTCATCAG GTGACAGAGA AGCCTGTCAG CTACAGTAAC CTGGATGACA AAAAGATTTC CAACAAAACA
GTTGTCCCTC CTCCTACCGA CCCACAACAG GCTGTCAGAT GCTTGAAGGT GCTCCAGTGC GGAGGGTCCA
TCCAGGATGT TTCCGTGCCT GAGGTTAAGA AGGTTACAAA AGTCCCATTC AAGGCCCCCT TTTTCCCCAA
TGTCACAATT GATCCTGAGT GCTACATCGT GGTTGACCCA GTCACTTACT CCGCAGCGAT GCGGGGCGGG
TATGGTGTGT CACACTTGAT CGTTGGATTG GGTGATTTCG CAGAGGTCAA CGGGCTCAGG TTTGTTAGTG
GGGGCCAAAT TGCTGATTTT GTCTGCTTGG GGCTGTATGT TTTGCTTAAT TTCCTTCTTT CGGCCTGGTT
GTCCAGCCCT GTGAGTTGTG GACGAGGTAC CAATGATCCC TGGTGCAGGA ACCCTTTCTC TTACCCAGTG
GTGGGTCAAG GGGTTATGTG CAATTCACAT TTGTGTGTTG CGGAGGATGG TTTGACATCA CCAATGACTT
TGTCCTATAG CTTGATTGAT TGGGCGCTCA TGGTTGCCAT CATGGCGACA GTGGCCATTT TCTTTGCTAA
GATCTCATTG CTTGTGGATG TTGTTTGTGT GTTTTGCTGC CTATTGATGT ATGCCTTCCC TAGTTTGTCT
ATTGCTGCCT TTGGGTTTCC CTTTGTTTTG TGCAAAGTTT CATTGCATCC CATAACATTG GTTTGGGTGC
AGTTCTTTTT GCTGGCAGTG AATGTGTGGG CAGGTGTGGC CTCAGTGGTA GTGTTGATTT CCTCCTGGTT
TTTGGCTCGA GCCACATCAT CGCTCGGCTT GATTACCCCA TATGATGTGC ACATGATAAC AGCTACACCA
CGTGGAGCAA GCTCATTGGC CTCCGCCCCA GAAGGTACCT ACCTGGCAGC GGTACGTCGG TCTGCATTGA
CTGGACGGTG CTGCATGTTT GTCCCAACTA ACTTTGGTAG TGTTCTTGAG GGCAGTCTCA GAACCAGGGG
CTGTGCAAAG AACGTGGTGT CTGTCTTCGG GTCGGCATCC GGCTCCGGGG GCGTCTTCAC AATCAATGGC
AACCCCGTGG TGGTAACTGC ATCCCACCTG CTATCTGATG GTAAGGCACG AGTGTCATGC GTTGGGTTTT
CCCAGTGCCT GGATTTCAAG TGTGCCGGTG ATTATGCATT TGCTAGGGTC GCTAACTGGA AGGGCGATGC
TCCCAAGGCT GAATTGTCAC ATCGGAGAGG CCGAGCTTAT TGCTCACCGC TAGTGGGGTT GAGCCTGGAT
TTGTTGGGGA AAAATTCTGC CTTCTGCTTC ACAAAGTGTG GGGACTCAGG TTCACCTGTT GTTGATGAGG
ATGGCAACTT GCTAGGAATC CACACCGGCT CCAACAAGCG TGGATCCGGG ATGGTTACAA CACATGGTGG
CAAGACTCTG GGAATGGCAA ATGTTAAGYT GAGTGAGATG TGTCCTCATT ACAGTGGCCC YGGTGTMCCG
GTGTCGACAG TTAAATTGCC TAAACATCTG GTTGTTGACG TCGAAACCGT GYCCAGTGAC TTGGTAGCGG
TTGTAGAATC GTTGCCTGCA CTTGAGGGAG CACTGTCATC CATGCAGCTG CTTTGTGTGT TCTTCTTTTT
GTGGCGCCTG ATTCATGTCC CCGATGTGCC TGTGATTCGG ATAGCATTCT TCTTCTTGAA TGAGATTCTG
CCAGTGATGC TAGCAAGGTT GATGTTCTCT TTTGCATTGT CCCTGTTTTT CTGTGTTCAC TGGCTATTCT
GTTCAAGTGT TGCTGTTGCG TTTGGTGATT GCTGCTCTAA ATCGGTCACT GGATATTCTG TTCAAGTGTT
GCTGTTGCGT TTGGTGATTG CTGCTCTAAA TCGGCCTTGT GGTCCTTTTG GTTTTTCTCT GTTGGGGCAA
TTGTCTCAAT GCTGTCTGAT GCTGTGTCTC TTGGATATAG AATTACAATT ACTTGGCTGT TTGTACCTAG
GGCAGCTACT GATGTGGCCC CCCAAAGAAA TTTTCTTCCA TCCTACTGGC CAATTCATGT TTTTGCCCCT
ATTTTTGAGT TTGTTTAAGC GTAATGCCTT GGCAGACATG CTGGTGGGGA ATGGGTGCTT TGATGCTGCA
TTTTTCCTGA AGTACTTTGC GGAGGGGAAT TTGCGCGAYG GCGTCTCAGA CTCCTGCAAC ATGACCCCGG
AGGGGCTTAC TGCCGCGTTG GCTATTACCT TATCTGATGA TGACTTGGAG TTTCTGCAAC GTCATTCTGA
ATTTAAGTGC TTTGTTAGTG CTTCAAACAT GAGGAACGGC GCAAAGGAAT TCATTGAATC TGCCTATGCC
CGAGCTCTCA GGGCTCAACT AGCTGCCACA GATAAAATCA AGGCCTCCAA GAGCATCCTG GCCAAACTGG
AAAGCTTCGC CGGGGGCGTG GTTACCCAAG TTGAGCCAGG AGATGTTGTG GTAGTGCTTG GAAAGAAAGT
GATCGGGGAC CTGGTTGAGG TTGTCATCAA CGATGCAAAA CACGTAATTC GTGTGATTGA AACCAGGACC
ATGGCCGGAA CACAATTTTC TGTTGGCACC ATCTGTGGAG ATCTGGAAAA TGCTTGTGAA GACCCCAGCG
GACTGGTCAA GACCTCAAAG AAGCAGGCCC GCCGCCAGAA GAGGACCGGA CTGGGAACTG AGGTGGTTGG
TACTGTTGTG ATCGACGGGG TATCTTATAA TAAAGTTTGG CACATAGCCA CAGGAGATGT GACTTACGAA
GGTTGTCTAG TGACTGAGAA CCCCCAGTTA CGCCCATTGG GTATGACCAC AATTGGTCGC TTCCAAGAAT
TCATAAGGAA GCACGGTGAA AAAGTGAAGA CCTCGGTTGA GAAATACCCG GTGGGGAAGA AGAAGTCCGT
CGAGTTYAAC ATAACAACCT ACCTGCTTGA TGGTGAAGAA TATGATGTGC CTGATCATGA GCCATTGGAA
TGGACTATCA CCATTGGAGA GTCTGATTTG GAGGCAGAAA GACTTACTGT GGACCAGGCC CTTCGTCACA
TGGGCCATGA TTCCTTGCTG ACTGCAAAGG AAAAGGAGAA GCTTGCCCGC ATCATTGAAA GTCTCAATGG
ATTGCAGCAG GCATCGGCTT TAAACTGCTA GCCACCTCTG GTCTCGACCG CTGTACTAGA GGTGGGCTGA
CGGTGTYTGG CGATGCGGTC AAGCTGGTGA GGTATCACTC CCGAACTTTT TCCATTGGAG ATGTCAACTT
AAARGTCATG GGCCGAGAAG AGTACGGCCG TACGGTCGGA AAACAAGGCC ATTGCTTAGT TGCYAACCTG
GTTGATGGCG TGGTTGTCAT GCGCAAACAC GAGCCGTCCC TGGTAGATGT CTTATTGACT GGAGAGGATG
CTGATCTCAT CTCACCCACC CACGGCCCTG GGAACACTGG GGTTCATGGG TTTACCTGGG ATTTTGAAGC
TCCCCCAACT GATTTGGAAC TTGAATTGTC TGAACAAATT ATAACTGCAT GCTCCATTCG TCGAGGTGAT
GCTCCCTCCC TGGACCTCCC TTACAAGCTG CACCCAGTTA GGGGCAACCC GTATAGGGAC CGTGGAGTGT
TGTACAACAC CCGATTTGGG GACATAAAAT ACTTGACCCC ACAAAAGACG AAGGAACCTT TGCATGCTGC
TGCATGCTTC AATCCTAAAG GAGTGCCAGT TAGTGACTCA GAAACTTTGG TTGCGACTAC CTTGCCTCAT
GGGTTTGAGT TGTACGTACC AACAATTCCC CAGAGCGTAC TGGAATATCT TGACAGTCGC CCGATGCATC
GAAAATGTTG TGTAAGAGCC GTTGTGCGTG GTCTCGCTGA ATGTGACCTC CAAAAATTTG ACTTGTCACG
ACAGGGTTTT GTCTTGCCTG GTGTGCTTTA CATGGTTCGC AGGTATTTGT GTCGACTGGT TGGAATAAGG
CGACGCCTCT TCTTGCCGTC CACTTATCCT GCGAAGAATT CCATGGCTGG CATAAATGGC AATAGATTTC
CAACCCATGT TGTTCAGTCT CACCCAGATA TTGATGCCTT ATGCGAGCGA GCTTGCAAAG AGCATTGGCA
AACTGTCACC CCATGTACCT TAAAGAAACA GTACTGTTCA AAAGCTAAAA CCCGAACTAT TCTGGGAACC
AACAATTTCG TCGCATTGGG CCTTAGATCC GCTCTGAGCG GGGTCACACA GGGCTTTATG CGAAAAGGAA
TTGGGTCTCC CATTTGCTTG GGTAAAAACA AGTTCACCCC GCTACCAACC AAGGTTAGCG GCCGCTGCCT
CGAGGCTGAT CTCGCCTCAT GTGACCGGTC AACTCCGGCA ATAATCAGGT GGTTTACCAC GAACTTGCTG
TTTGAGTTGG CAGGGCCGGA AGAATGGATT CCATCTTATG TTTTGAATTG TTGCCACGAT GCCGTGAGCA
CGATGAGTGG CTGCTTTGAT AAGAGGGGTG GATTGTCATC TGGAGATCCT GTGACTAGTG TGAGCAATAC
TGTGTATAGC TTAGTCATCT ATGCTCAACA CATGGTGCTG TCTGCATTTA GGTGTGGTCA TAAAGTGGGA
GGCTTGTTCT TACGAGATTC CCTTGAAATG GAACAGCTCT TCGAACTGCA ACCGTTGTTG GTGTACTCCG
ACGATGTTGT GCTCTACGAC GAAAGTAGTG AGCTGCCAAA TTATCACTTT TTTGTTGACC ACCTTGATCT
AATGCTGGGA TTCAAGACTG ATAGGTCCAA GACTGTCATC ACCTCAGATC CCCAATTTCC TGGCTGTCGC
ATTGCTGCTG GAAGGGTTTT GGTGCCACAA AGAGATCGTA TCTTAGCCGC ACTGGCGTAC CATATGAAGG
CTAGTTGTGT TAGTGATTAC TTCGCTAGTG CTGCGGCCAT TCTAATGGAT GCATGTGCGT GCTGTGATTA
TGATGAGGAC TGGTACTTTG ACCTTGTCTG CGGTATTGCT GATTGTGCCA GAAAAGAAGG ATTCAGGTTC
CCTGGGCCTA GCTTTTATGT TGACATGTGG AAACGCTTGT CAGTTGAGGA AAAGAAGAAA TGCAGGACCT
GCGCTCATTG TGGTGCACCC TCCACTTTGG TGAGCAGTTG CGGCCTCAAC TTGTGTGACT ATCACGGTCA
TGGCCACCCT CATTGCCCGG TTGTGCTGCC ATGCGGACAC GCCGTAGGCT CAGGTGTCTG TGACGGGTGT
TCTTCCCCGG TCATGAGTTT GAACACAGAA TTGGATAAGC TTCTTGCATG TGTCCCGTAC CACCCCCCAA
ARGTAGAGTT GCTCTCCGTC AATGACGGGG TTAGTAGCCT GCCACCTGGG AGGTATCAGG CACGCGGAGG
AGTAGTGTCC GTCAGAAGAG ACATCCTTGG AAATGTGGTG GACCTTCCCG ATGGGGATTA CCAGGTTATG
AAGGTTGCAC AGACCTGTGC AGACATCTGC ATGGTTTCCA TCAACAGCCA CATTCTAAGA TCACAATTCA
TCACCGGCGC CCCAGGGACC GGAAAGACTA CTTACCTACT AAGTGTTGTG AGGGATGATG ATGTCATATA
CACTCCCACT CATAGAACCA TGTTAGATGT GGTCAAAGCA TTGGGTACCT GTAGGTTTGA TCCACCCAAG
GATACACCAC TTGAGTTCCC GGTTCCTAGT CGGACTGGGC CATGCGTCCG GTTGATTAGG GCTGGGTTCA
TTCCGGGAAG GGTCAGTTAC CTTGATGAGG CTGCCTATTG CAACCCATTG GATGTGCTCA AAATTCTGTC
AAAGACCCCC CTGGTGTGTG TTGGCGACTT AAATCAGCTT CCCCCTGTCG ATTTCATCGG ACCTTGCTAT
GCATTCGCGT TGATGCTAGG CAGACAACTG ATAGAGGTGT TTCGATTCGG GCCCTCTATT GTCAACCCAA
TAAAGAAGTT CTACAGGGAA GAGTTGGTTT CACGAGGGCC TGATACTGGA GTAAAATTTC TGAAGAGTTA
TCAACCCTAT GGACAGGTCT TAACACCTTA TCATCGTGAT CGCGTTGATG GCGCCATCAC CATTGATTCT
AGCCAGGGTT GYACTTATGA TGTGATAACA GTGTATTTGC CAACACCCAA ATCACTGAAT TCAGCCAGAG
CCCTTGTTGC CATAACTAGA GCCAGATTTT ATGTGTTTGT ATATGATCCT CATAATCAAT TAGAACAGTA
CTTGAATATG TCTGAGCATG AACCGGCTGG CGCTGTGGCA TTTTGGTGTG GGGAACAGCC AATGATGATT
TCTGAGGGGC GTGTTCAAAG GCTTAGTGGA CCAGCACAAA CGACTGATCC CAAATTGCAG CAGTTAATGG
GGCTTGAAGG AACTGCGTCC CCACTGCCTC AAGTTGCTCA CAACTTGGGC TTTTATTATT CTCCTGATTT
GGTTCAATTT GCTAGGATAC CATCAGAATT GTGTAAACAT TGGCCTGTAG TTACGGCACA AAACAGAACT
GACTGGCCTG ATAGGCTAGT GTGCAGCATG AGCAAAATTG ACAAGTGCTC TCGAGCCATC TTTTGTGCCG
GGTATCATGT GGGCCCCAGT GTCTTCTTAG GAGTCCCTGG TGTGGTGTCC TATTATTTGA CCAAATTCTT
GAAGGGAAAG CCAGTTCCAC TGCCTGATTC CCTAATGTCA ACAGGGAGAA TAGCACTGAA CGTGCGTGAA
TATTTGGATG AAAAGGAGAT GGAGTTTTCC TCGAGGTGTC CCCATGCCTT CATTGGAGAA GTGAAGGGAA
GTAATGTTGG TGGATGTCAT CATGTAACCT CGAGATATCT CCCTCCAGTT CTGGTCCCCG GCTCCGTGGT
GAAGATTGGA GTCAGCTGTC CTGGTAAAGC AGCAAAGGAG TTGTGCACTG TGACTGATGT CTACCTACCG
GAGCTGGATC CTTACCTTAA CCCCCCAACA AAAAGTATGG ACTATAAGCT ATTGGTTGAT TTTCAGCCCG
TCAAGCTTAT GGTTTGGAAG GATGCTACAG CGTATTTTCA TGAAGGCATT CGCCCCATGG AATCCATGTC
CCGGTTTCTA AAGGTTCCTC AGGAGGAGGG TGTGTTCTTT GATCTGGACG AATTTGTTAC AAATGCTAAA
GTTTCAAAAT TACCCTGCAA GTACTCGGTG AGTGCGAATC AGTTTTTAAC TGATGTCGTG TTGTCCATGA
CTCACCCAAG TCTAGCCCCC CCTGATTATG AATTGTTGTT TGCTAGAGCC TATTGTGTGC CGGGGCTTGA
TGTCGGCACA CTAAATGCAT ACATTTATAG GCGTGGGCCA TCCACCTATA CCACAAGTAA CATTGCCCGC
TTGGTTAAGG ACATCTGCTG TCCCGTTGGC TGCAAAGGAA GCGGGTACAT GTTTCCAAAG TGA
Products
| Product | orf1a |
| Description | RNA-dependent RNA polymerase |
MQSGFDRCLC TPNARVFWER GQVYCTRCLA ARPLLPLSQQ HPRLGALGLF YRPASPLSWE APVTYPTKEC
RPGGMCWLSS IYPIARMTSG NHNFQARLNF IASVVYRDGK LTSKHLEEDF EVYSRGCRWY PITGPVPGIA
LYANAVHVSD ESFPGATHVL SNLPLPQQPL RKGXCPFADA RANVWRYKGN TVFVSPQGYL WTTGSNDSVP
EPWGEDRRLC EKIISSLPAD HLVKINFSNY PFDYSFTGGD GAGFVVFPCK ERDTKFSKCW EKIFEDHSGW
MAACEEADLA DRMGYRTPAG VAGPYLARRL QVRGLRAVVK PENNDYIVWA LGVPESYIRH VSRAGEPVEE
FFVKVGEFSI VSNCVVTPHP KFRFQTRKYY GYSPPGDGAC GLHCISAMLN DIFGDSFTTR LGKCSRDSSE
WLSDQDLYQL VMTANLPATI GHCPSAIYKL DCVNQHWTVT KRKGDRAVGR LAPDCLRGVC GECEMGIHIG
ADTDLSPIVE LQLAQDVSPR PGALLWFLEL HELCVVDDDF AHAIARAGEE YRRAMGIPRD DWVILAELMT
ENCRTRHQVL EKLQRGLQLQ ASSRPSSPAS VSPASSVDLS AAGLLLSGTE SDKEAVVAVN DGCYTVLGFD
KNEATKSEQD LATDLFCDLV KPMETSTTKL ESRKILEAAA KALESCKPKR KRSRKKKTRT PSPTCSVDAA
VAEPTSVNSL GNQDTRETCA SEKKAEKCPT PTPPPRPKRA ALKNSNSGCV LKDIIWNQTG PGVKCLTIVE
DVRAFLKGIT PPGGVLSTRS RITKHIVDHF HSICEQTPEL VLAHAEHQAK NLHELLASET AKLILGIGED
PLKKLVGSQR SLPRRLGFGA WLGGQQKTSG GCGEREFKDV GRKSGAERTP SKRDLGVSLG DQLSQDGARR
LSSSTACEIK ESVPPIIDSG GGLSQKFMAW LNHQVFVLSS HLLAVWSFIF GSRQVLGVFD YVYTLFCLCC
VLLCFYLPAI GFMTLVGCVF GSPWRVRLSV FSVWLCVAVV VFQEVLPEPG AVCTSASAER AAALERYTSN
GVHRPVNHLS VGLVGTVAGF VARSVGGPRR YWFYFLRLMV LLDLGLVFLA VALRGSCKKC FCKCVRTASH
EVQLRVFPST KVARTTLEAI CDMYSAPRVD PIFIATGVRG CWTGSVSPHQ VTEKPVSYSN LDDKKISNKT
VVPPPTDPQQ AVRCLKVLQC GGSIQDVSVP EVKKVTKVPF KAPFFPNVTI DPECYIVVDP VTYSAAMRGG
YGVSHLIVGL GDFAEVNGLR FVSGGQIADF VCLGLYVLLN FLLSAWLSSP VSCGRGTNDP WCRNPFSYPV
VGQGVMCNSH LCVAEDGLTS PMTLSYSLID WALMVAIMAT VAIFFAKISL LVDVVCVFCC LLMYAFPSLS
IAAFGFPFVL CKVSLHPITL VWVQFFLLAV NVWAGVASVV VLISSWFLAR ATSSLGLITP YDVHMITATP
RGASSLASAP EGTYLAAVRR SALTGRCCMF VPTNFGSVLE GSLRTRGCAK NVVSVFGSAS GSGGVFTING
NPVVVTASHL LSDGKARVSC VGFSQCLDFK CAGDYAFARV ANWKGDAPKA ELSHRRGRAY CSPLVGLSLD
LLGKNSAFCF TKCGDSGSPV VDEDGNLLGI HTGSNKRGSG MVTTHGGKTL GMANVKXSEM CPHYSGPGVP
VSTVKLPKHL VVDVETVXSD LVAVVESLPA LEGALSSMQL LCVFFFLWRL IHVPDVPVIR IAFFFLNEIL
PVMLARLMFS FALSLFFCVH WLFCSSVAVA FGDCCSKSVT GYSVQVLLLR LVIAALNRPC GPFGFSLLGQ
LSQCCLMLCL LDIELQLLGC LYLGQLLMWP PKEIFFHPTG QFMFLPLFLS LFKRNALADM LVGNGCFDAA
FFLKYFAEGN LRXGVSDSCN MTPEGLTAAL AITLSDDDLE FLQRHSEFKC FVSASNMRNG AKEFIESAYA
RALRAQLAAT DKIKASKSIL AKLESFAGGV VTQVEPGDVV VVLGKKVIGD LVEVVINDAK HVIRVIETRT
MAGTQFSVGT ICGDLENACE DPSGLVKTSK KQARRQKRTG LGTEVVGTVV IDGVSYNKVW HIATGDVTYE
GCLVTENPQL RPLGMTTIGR FQEFIRKHGE KVKTSVEKYP VGKKKSVEXN ITTYLLDGEE YDVPDHEPLE
WTITIGESDL EAERLTVDQA LRHMGHDSLL TAKEKEKLAR IIESLNGLQQ ASALNC
| Product | orf1a-orf1b |
| Description | putative protease and RNA-dependent RNA polymerase. |
| Modifications | 6675..6675:ribosomal_frameshift |
MQSGFDRCLC TPNARVFWER GQVYCTRCLA ARPLLPLSQQ HPRLGALGLF YRPASPLSWE APVTYPTKEC
RPGGMCWLSS IYPIARMTSG NHNFQARLNF IASVVYRDGK LTSKHLEEDF EVYSRGCRWY PITGPVPGIA
LYANAVHVSD ESFPGATHVL SNLPLPQQPL RKGXCPFADA RANVWRYKGN TVFVSPQGYL WTTGSNDSVP
EPWGEDRRLC EKIISSLPAD HLVKINFSNY PFDYSFTGGD GAGFVVFPCK ERDTKFSKCW EKIFEDHSGW
MAACEEADLA DRMGYRTPAG VAGPYLARRL QVRGLRAVVK PENNDYIVWA LGVPESYIRH VSRAGEPVEE
FFVKVGEFSI VSNCVVTPHP KFRFQTRKYY GYSPPGDGAC GLHCISAMLN DIFGDSFTTR LGKCSRDSSE
WLSDQDLYQL VMTANLPATI GHCPSAIYKL DCVNQHWTVT KRKGDRAVGR LAPDCLRGVC GECEMGIHIG
ADTDLSPIVE LQLAQDVSPR PGALLWFLEL HELCVVDDDF AHAIARAGEE YRRAMGIPRD DWVILAELMT
ENCRTRHQVL EKLQRGLQLQ ASSRPSSPAS VSPASSVDLS AAGLLLSGTE SDKEAVVAVN DGCYTVLGFD
KNEATKSEQD LATDLFCDLV KPMETSTTKL ESRKILEAAA KALESCKPKR KRSRKKKTRT PSPTCSVDAA
VAEPTSVNSL GNQDTRETCA SEKKAEKCPT PTPPPRPKRA ALKNSNSGCV LKDIIWNQTG PGVKCLTIVE
DVRAFLKGIT PPGGVLSTRS RITKHIVDHF HSICEQTPEL VLAHAEHQAK NLHELLASET AKLILGIGED
PLKKLVGSQR SLPRRLGFGA WLGGQQKTSG GCGEREFKDV GRKSGAERTP SKRDLGVSLG DQLSQDGARR
LSSSTACEIK ESVPPIIDSG GGLSQKFMAW LNHQVFVLSS HLLAVWSFIF GSRQVLGVFD YVYTLFCLCC
VLLCFYLPAI GFMTLVGCVF GSPWRVRLSV FSVWLCVAVV VFQEVLPEPG AVCTSASAER AAALERYTSN
GVHRPVNHLS VGLVGTVAGF VARSVGGPRR YWFYFLRLMV LLDLGLVFLA VALRGSCKKC FCKCVRTASH
EVQLRVFPST KVARTTLEAI CDMYSAPRVD PIFIATGVRG CWTGSVSPHQ VTEKPVSYSN LDDKKISNKT
VVPPPTDPQQ AVRCLKVLQC GGSIQDVSVP EVKKVTKVPF KAPFFPNVTI DPECYIVVDP VTYSAAMRGG
YGVSHLIVGL GDFAEVNGLR FVSGGQIADF VCLGLYVLLN FLLSAWLSSP VSCGRGTNDP WCRNPFSYPV
VGQGVMCNSH LCVAEDGLTS PMTLSYSLID WALMVAIMAT VAIFFAKISL LVDVVCVFCC LLMYAFPSLS
IAAFGFPFVL CKVSLHPITL VWVQFFLLAV NVWAGVASVV VLISSWFLAR ATSSLGLITP YDVHMITATP
RGASSLASAP EGTYLAAVRR SALTGRCCMF VPTNFGSVLE GSLRTRGCAK NVVSVFGSAS GSGGVFTING
NPVVVTASHL LSDGKARVSC VGFSQCLDFK CAGDYAFARV ANWKGDAPKA ELSHRRGRAY CSPLVGLSLD
LLGKNSAFCF TKCGDSGSPV VDEDGNLLGI HTGSNKRGSG MVTTHGGKTL GMANVKXSEM CPHYSGPGVP
VSTVKLPKHL VVDVETVXSD LVAVVESLPA LEGALSSMQL LCVFFFLWRL IHVPDVPVIR IAFFFLNEIL
PVMLARLMFS FALSLFFCVH WLFCSSVAVA FGDCCSKSVT GYSVQVLLLR LVIAALNRPC GPFGFSLLGQ
LSQCCLMLCL LDIELQLLGC LYLGQLLMWP PKEIFFHPTG QFMFLPLFLS LFKRNALADM LVGNGCFDAA
FFLKYFAEGN LRXGVSDSCN MTPEGLTAAL AITLSDDDLE FLQRHSEFKC FVSASNMRNG AKEFIESAYA
RALRAQLAAT DKIKASKSIL AKLESFAGGV VTQVEPGDVV VVLGKKVIGD LVEVVINDAK HVIRVIETRT
MAGTQFSVGT ICGDLENACE DPSGLVKTSK KQARRQKRTG LGTEVVGTVV IDGVSYNKVW HIATGDVTYE
GCLVTENPQL RPLGMTTIGR FQEFIRKHGE KVKTSVEKYP VGKKKSVEXN ITTYLLDGEE YDVPDHEPLE
WTITIGESDL EAERLTVDQA LRHMGHDSLL TAKEKEKLAR IIESLNGLQQ ASALNLLATS GLDRCTRGGL
TVXGDAVKLV RYHSRTFSIG DVNLXVMGRE EYGRTVGKQG HCLVANLVDG VVVMRKHEPS LVDVLLTGED
ADLISPTHGP GNTGVHGFTW DFEAPPTDLE LELSEQIITA CSIRRGDAPS LDLPYKLHPV RGNPYRDRGV
LYNTRFGDIK YLTPQKTKEP LHAAACFNPK GVPVSDSETL VATTLPHGFE LYVPTIPQSV LEYLDSRPMH
RKCCVRAVVR GLAECDLQKF DLSRQGFVLP GVLYMVRRYL CRLVGIRRRL FLPSTYPAKN SMAGINGNRF
PTHVVQSHPD IDALCERACK EHWQTVTPCT LKKQYCSKAK TRTILGTNNF VALGLRSALS GVTQGFMRKG
IGSPICLGKN KFTPLPTKVS GRCLEADLAS CDRSTPAIIR WFTTNLLFEL AGPEEWIPSY VLNCCHDAVS
TMSGCFDKRG GLSSGDPVTS VSNTVYSLVI YAQHMVLSAF RCGHKVGGLF LRDSLEMEQL FELQPLLVYS
DDVVLYDESS ELPNYHFFVD HLDLMLGFKT DRSKTVITSD PQFPGCRIAA GRVLVPQRDR ILAALAYHMK
ASCVSDYFAS AAAILMDACA CCDYDEDWYF DLVCGIADCA RKEGFRFPGP SFYVDMWKRL SVEEKKKCRT
CAHCGAPSTL VSSCGLNLCD YHGHGHPHCP VVLPCGHAVG SGVCDGCSSP VMSLNTELDK LLACVPYHPP
XVELLSVNDG VSSLPPGRYQ ARGGVVSVRR DILGNVVDLP DGDYQVMKVA QTCADICMVS INSHILRSQF
ITGAPGTGKT TYLLSVVRDD DVIYTPTHRT MLDVVKALGT CRFDPPKDTP LEFPVPSRTG PCVRLIRAGF
IPGRVSYLDE AAYCNPLDVL KILSKTPLVC VGDLNQLPPV DFIGPCYAFA LMLGRQLIEV FRFGPSIVNP
IKKFYREELV SRGPDTGVKF LKSYQPYGQV LTPYHRDRVD GAITIDSSQG XTYDVITVYL PTPKSLNSAR
ALVAITRARF YVFVYDPHNQ LEQYLNMSEH EPAGAVAFWC GEQPMMISEG RVQRLSGPAQ TTDPKLQQLM
GLEGTASPLP QVAHNLGFYY SPDLVQFARI PSELCKHWPV VTAQNRTDWP DRLVCSMSKI DKCSRAIFCA
GYHVGPSVFL GVPGVVSYYL TKFLKGKPVP LPDSLMSTGR IALNVREYLD EKEMEFSSRC PHAFIGEVKG
SNVGGCHHVT SRYLPPVLVP GSVVKIGVSC PGKAAKELCT VTDVYLPELD PYLNPPTKSM DYKLLVDFQP
VKLMVWKDAT AYFHEGIRPM ESMSRFLKVP QEEGVFFDLD EFVTNAKVSK LPCKYSVSAN QFLTDVVLSM
THPSLAPPDY ELLFARAYCV PGLDVGTLNA YIYRRGPSTY TTSNIARLVK DICCPVGCKG SGYMFPK
Publication
- Bekaert M, Rousset JP. (2005) An extended signal involved in eukaryotic -1 frameshifting operates through modification of the E site tRNA. Mol Cell. 17(1):61-68. [abstract]