Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200521"

Accession numberr200521 [export]
Locus namegag-pol
Recode1 namepol_m_vir_biv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismBovine immunodeficiency virus [details]
AcronymBIV

Sequence

GenBank IDsNC_001413
SequenceRNA of 4427 nucleotides [sequence]
OrganisationTrans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,320)
Descriptionpotentional secondary structure downstream of frameshifting site. This is the CDS part of the sequence.
ModelsHMM
ATGAAGAGAA GGGAGTTAGA AAAGAAGCTT CGTAAGGTTA GGGTGACACC CCAACAGGAT AAATATTATA CTATAGGGAA TCTTCAATGG GCCATTAGAA TGATAAATCT AATGGGGATC AAATGTGTGT GTGACGAGGA GTGCTCGGCA GCAGAGGTAG CCCTTATCAT AACCCAATTT TCAGCTTTAG ACTTAGAAAA TTCTCCTATC AGAGGTAAGG AGGAGGTGGC CATAAAAAAT ACTCTGAAGG TTTTCTGGTC CCTGCTGGCG GGGTACAAAC CAGAGAGTAC AGAAACGGCC CTAGGATATT GGGAGGCCTT TACATATAGA GAAAGGGAGG CCAGAGCTGA TAAGGAAGGC GAAATTAAGA GTATTTACCC TTCCCTAACA CAGAACACAC AGAATAAGAA GCAGACATCG AATCAGACAA ACACTCAATC ATTACCAGCT ATCACTACTC AAGATGGTAC TCCTAGGTTT GATCCTGACC TCATGAAGCA GCTTAAGATC TGGTCAGACG CCACTGAAAG AAATGGGGTT GACCTTCATG CAGTGAATAT ATTAGGGGTC ATTACAGCAA ACCTAGTACA GGAAGAAATT AAACTCCTCT TGAATAGTAC ACCCAAGTGG AGATTAGATG TACAACTTAT AGAATCAAAA GTAAGAGAGA AAGAAAATGC CCACAGAACG TGGAAACAGC ATCATCCAGA AGCCCCAAAA ACAGATGAAA TCATCGGTAA GGGGCTTAGT TCTGCTGAAC AAGCCACCCT GATCTCAGTA GAATGCAGAG AAACTTTCAG ACAGTGGGTG CTGCAGGCAG CTATGGAGGT GGCACAGGCA AAACATGCTA CCCCAGGTCC CATCAACATT CATCAGGGAC CCAAGGAGCC GTACACAGAC TTTATAAATA GATTAGTGGC AGCCCTTGAA GGTATGGCGG CTCCAGAAAC CACAAAAGAA TACTTACTCC AACATCTATC TATTGATCAT GCCAATGAAG ACTGCCAGTC TATTCTAAGA CCTTTGGGAC CCAACACCCC AATGGAGAAA AAATTAGAAG CATGTAGGGT AGTGGGATCT CAGAAATCAA AGATGCAATT TTTGGTAGCA GCTATGAAAG AAATGGGGAT CCAATCACCA ATTCCAGCAG TCTTGCCTCA CACACCAGAA GCATATGCCT CCCAAACCTC AGGGCCCGAG GATGGTAGGA GATGTTACGG ATGTGGGAAG ACAGGACATT TGAAGAGGAA TTGTAAACAG CAAAAATGCT ACCATTGTGG CAAACCTGGC CACCAAGCAA GAAACTGCAG GTCAAAAAAC GGGAAGTGCT CCTCTGCCCC TTATGGGCAG AGGAGCCAAC CACAGAACAA TTTTCACCAG AGCAACATGA GTTCTGTGAC CCCATCTGCA CCCCCTCTTA TATTAGATTA GACAAACAGC CTTTTATAAA GGTGTTCATA GGGGGAAGAT GGGTAAAAGG GTTAGTAGAC ACTGGAGCAG ATGAGGTAGT GCTTAAGAAC ATACATTGGG ATAGGATAAA AGGGTATCCA GGGACACCAA TTAAACAAAT TGGGGTAAAT GGAGTAAATG TGGCCAAAAG GAAGACCCAC GTAGAGTGGA GATTTAAGGA TAAGACTGGG ATAATTGATG TCTTGTTCTC AGATACTCCT GTAAACCTTT TTGGGAGATC TCTTCTACGT AGCATAGTGA CTTGCTTCAC CCTACTTGTT CACACAGAAA AAATCGAACC CCTACCCGTC AAGGTAAGGG GACCAGGGCC TAAGGTACCC CAGTGGCCCT TGACAAAAGA AAAGTATCAG GCTCTTAAGG AAATTGTGAA AGATCTTTTA GCAGAAGGAA AAATTTCCGA AGCTGCTTGG GATAACCCAT ATAATACCCC AGTTTTTGTT ATAAAGAAAA AGGGAACGGG AAGATGGAGG ATGCTAATGG ATTTTAGGGA ATTAAATAAG ATAACAGTTA AAGGACAAGA ATTCTCTACA GGCTTACCTT ACCCTCCAGG AATTAAGGAA TGTGAACACT TAACTGCAAT AGATATAAAA GATGCCTACT TTACTATCCC TTTACATGAG GACTTTAGAC CCTTTACAGC CTTCTCTGTA GTCCCTGTAA ATCGAGAAGG ACCTATAGAG AGGTTCCAGT GGAATGTTCT ACCACAAGGA TGGGTATGTA GCCCTGCCAT TTATCAGACT ACCACCCAGA AGATTATAGA AAACATTAAA AAGAGTCACC CAGATGTCAT GTTGTATCAA TATATGGATG ATTTGTTGAT TGGGTCTAAT AGGGATGATC ATAAGCAAAT AGTGCAGGAA ATCAGGGATA AGTTAGGATC ATATGGTTTC AAGACTCCAG ATGAAAAGGT CCAGGAAGAG AGAGTGAAAT GGATCGGTTT TGAGCTCACA CCCAAGAAAT GGCGTTTTCA GCCCAGGCAA CTAAAGATAA AAAACCCACT CACAGTAAAT GAATTACAGC AATTAGTAGG TAATTGTGTT TGGGTACAGC CAGAAGTAAA AATCCCTCTA TACCCCTTAA CCGATCTACT GAGGGATAAG ACCAATCTCC AAGAAAAGAT ACAACTAACA CCAGAAGCCA TCAAGTGTGT AGAAGAATTC AATCTAAAAC TAAAAGATCC AGAATGGAAA GATAGAATAA GAGAAGGAGC AGAATTAGTC ATAAAAATAC AGATGGTTCC TCGGGGCATA GTATTTGATC TGTTGCAAGA TGGAAATCCC ATATGGGGAG GAGTAAAAGG ACTAAATTAT GATCATTCAA ACAAAATAAA AAAGATACTT AGAACTATGA ATGAGCTGAA CAGAACAGTG GTAATTATGA CAGGAAGAGA AGCTAGTTTC CTGCTTCCTG GGTCTTCTGA AGATTGGGAA GCGGCACTCC AGAAGGAAGA AAGTCTAACA CAAATATTCC CAGTAAAGTT TTATAGGCAC TCCTGCAGAT GGACCTCCAT ATGTGGGCCA GTAAGAGAAA ATCTAACCAC CTACTATACT GACGGAGGGA AGAAAGGGAA AACAGCTGCA GCAGTATATT GGTGTGAAGG AAGGACTAAG TCAAAGGTAT TTCCAGGAAC CAATCAACAG GCGGAATTGA AGGCCATATG CATGGCTCTC TTGGATGGAC CACCAAAAAT GAATATCATA ACAGATAGTA GATACGCCTA TGAGGGAATG AGAGAAGAAC CAGAAACGTG GGCCAGGGAA GGAATCTGGC TGGAGATTGC CAAGATATTG CCCTTTAAGC AGTACGTGGG GGTCGGGTGG GTGCCTGCAC ATAAAGGGAT AGGAGGAAAT ACAGAGGCAG ATGAAGGAGT TAAGAAAGCC TTAGAACAGA TGGCCCCGTG TAGCCCTCCT GAGGCCATTC TATTAAAACC AGGAGAAAAA CAAAATCTGG AGACAGGGAT CTACATGCAG GGGCTTAGAC CACAAAGCTT CCTCCCAAGA GCAGACTTAC CAGTAGCCAT CACAGGAACC ATGGTAGATT CAGAGCTACA GCTACAGCTA CTTAACATAG GAACTGAGCA TATAAGAATC CAAAAAGATG AGGTCTTCAT GACCTGTTTC CTAGAAAATA TCCCCTCAGC CACTGAAGAT CATGAGAGAT GGCATACCTC ACCAGACATT TTGGTTAGGC AGTTCCATCT CCCTAAGAGA ATAGCTAAAG AGATAGTAGC CAGATGCCAA GAATGTAAAA GGACAACCAC TAGCCCAGTC AGAGGAACAA ACCCCAGAGG TCGATTCTTA TGGCAGATGG ACAATACTCA CTGGAATAAA ACAATTATTT GGGTAGCAGT AGAGACAAAT TCAGGATTAG TGGAAGCTCA GGTGATCCCT GAAGAAACAG CACTACAAGT AGCTCTCTGC ATTTTACAGC TAATCCAGAG ATATACAGTT CTTCACTTAC ATAGTGACAA CGGGCCGTGC TTTACTGCAC ACAGGATAGA AAATCTATGT AAGTATCTGG GGATCACAAA AACTACGGGA ATACCCTACA ACCCACAATC CCAGGGAGTT GTAGAAAGAG CCCACAGAGA TCTAAAAGAC AGATTGGCAG CTTATCAGGG AGATTGTGAA ACCGTAGAAG CAGCCCTTAG CCTCGCATTA GTTTCTTTAA ATAAAAAAAG AGGGGGAATA GGGGGCCATA CACCATATGA AATATACCTA GAATCAGAAC ATACCAAATA CCAAGACCAA CTAGAACAAC AATTTTCAAA ACAAAAAATT GAAAAGTGGT GTTACGTAAG GAACAGAAGA AAGGAATGGA AAGGACCCTA CAAAGTGTTG TGGGACGGAG ACGGGGCAGC AGTAATAGAG GAAGAGGGAA AAACAGCCTT ATATCCACAC CGTCATATGC GCTTCATCCC CCCCCCAGAT TCAGATATCC AAGATGGGAG TTCGTGA

Products

Productgag
Descriptiongag polyprotein
MKRRELEKKL RKVRVTPQQD KYYTIGNLQW AIRMINLMGI KCVCDEECSA AEVALIITQF SALDLENSPI RGKEEVAIKN TLKVFWSLLA GYKPESTETA LGYWEAFTYR EREARADKEG EIKSIYPSLT QNTQNKKQTS NQTNTQSLPA ITTQDGTPRF DPDLMKQLKI WSDATERNGV DLHAVNILGV ITANLVQEEI KLLLNSTPKW RLDVQLIESK VREKENAHRT WKQHHPEAPK TDEIIGKGLS SAEQATLISV ECRETFRQWV LQAAMEVAQA KHATPGPINI HQGPKEPYTD FINRLVAALE GMAAPETTKE YLLQHLSIDH ANEDCQSILR PLGPNTPMEK KLEACRVVGS QKSKMQFLVA AMKEMGIQSP IPAVLPHTPE AYASQTSGPE DGRRCYGCGK TGHLKRNCKQ QKCYHCGKPG HQARNCRSKN GKCSSAPYGQ RSQPQNNFHQ SNMSSVTPSA PPLILD
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase.
Modifications1320..1320:ribosomal_frameshift
MKRRELEKKL RKVRVTPQQD KYYTIGNLQW AIRMINLMGI KCVCDEECSA AEVALIITQF SALDLENSPI RGKEEVAIKN TLKVFWSLLA GYKPESTETA LGYWEAFTYR EREARADKEG EIKSIYPSLT QNTQNKKQTS NQTNTQSLPA ITTQDGTPRF DPDLMKQLKI WSDATERNGV DLHAVNILGV ITANLVQEEI KLLLNSTPKW RLDVQLIESK VREKENAHRT WKQHHPEAPK TDEIIGKGLS SAEQATLISV ECRETFRQWV LQAAMEVAQA KHATPGPINI HQGPKEPYTD FINRLVAALE GMAAPETTKE YLLQHLSIDH ANEDCQSILR PLGPNTPMEK KLEACRVVGS QKSKMQFLVA AMKEMGIQSP IPAVLPHTPE AYASQTSGPE DGRRCYGCGK TGHLKRNCKQ QKCYHCGKPG HQARNCRSKN REVLLCPLWA EEPTTEQFSP EQHEFCDPIC TPSYIRLDKQ PFIKVFIGGR WVKGLVDTGA DEVVLKNIHW DRIKGYPGTP IKQIGVNGVN VAKRKTHVEW RFKDKTGIID VLFSDTPVNL FGRSLLRSIV TCFTLLVHTE KIEPLPVKVR GPGPKVPQWP LTKEKYQALK EIVKDLLAEG KISEAAWDNP YNTPVFVIKK KGTGRWRMLM DFRELNKITV KGQEFSTGLP YPPGIKECEH LTAIDIKDAY FTIPLHEDFR PFTAFSVVPV NREGPIERFQ WNVLPQGWVC SPAIYQTTTQ KIIENIKKSH PDVMLYQYMD DLLIGSNRDD HKQIVQEIRD KLGSYGFKTP DEKVQEERVK WIGFELTPKK WRFQPRQLKI KNPLTVNELQ QLVGNCVWVQ PEVKIPLYPL TDLLRDKTNL QEKIQLTPEA IKCVEEFNLK LKDPEWKDRI REGAELVIKI QMVPRGIVFD LLQDGNPIWG GVKGLNYDHS NKIKKILRTM NELNRTVVIM TGREASFLLP GSSEDWEAAL QKEESLTQIF PVKFYRHSCR WTSICGPVRE NLTTYYTDGG KKGKTAAAVY WCEGRTKSKV FPGTNQQAEL KAICMALLDG PPKMNIITDS RYAYEGMREE PETWAREGIW LEIAKILPFK QYVGVGWVPA HKGIGGNTEA DEGVKKALEQ MAPCSPPEAI LLKPGEKQNL ETGIYMQGLR PQSFLPRADL PVAITGTMVD SELQLQLLNI GTEHIRIQKD EVFMTCFLEN IPSATEDHER WHTSPDILVR QFHLPKRIAK EIVARCQECK RTTTSPVRGT NPRGRFLWQM DNTHWNKTII WVAVETNSGL VEAQVIPEET ALQVALCILQ LIQRYTVLHL HSDNGPCFTA HRIENLCKYL GITKTTGIPY NPQSQGVVER AHRDLKDRLA AYQGDCETVE AALSLALVSL NKKRGGIGGH TPYEIYLESE HTKYQDQLEQ QFSKQKIEKW CYVRNRRKEW KGPYKVLWDG DGAAVIEEEG KTALYPHRHM RFIPPPDSDI QDGSS

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