Recode v. 2.0 / Database of translational recoding events.
Details for "r200521"
| Accession number | r200521 [export] |
| Locus name | gag-pol |
| Recode1 name | pol_m_vir_biv |
| Description | viral or mobile polyprotein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Bovine immunodeficiency virus [details] |
| Acronym | BIV |
Sequence
| GenBank IDs | NC_001413 |
| Sequence | RNA of 4427 nucleotides [sequence] |
| Organisation | Trans/Interaction (1)
|
Recoding event
| Event type | -1 Frameshifting (position: 1,320) |
| Description | potentional secondary structure downstream of frameshifting site. This is the CDS part of the sequence. |
| Models | HMM |
ATGAAGAGAA GGGAGTTAGA AAAGAAGCTT CGTAAGGTTA GGGTGACACC CCAACAGGAT AAATATTATA
CTATAGGGAA TCTTCAATGG GCCATTAGAA TGATAAATCT AATGGGGATC AAATGTGTGT GTGACGAGGA
GTGCTCGGCA GCAGAGGTAG CCCTTATCAT AACCCAATTT TCAGCTTTAG ACTTAGAAAA TTCTCCTATC
AGAGGTAAGG AGGAGGTGGC CATAAAAAAT ACTCTGAAGG TTTTCTGGTC CCTGCTGGCG GGGTACAAAC
CAGAGAGTAC AGAAACGGCC CTAGGATATT GGGAGGCCTT TACATATAGA GAAAGGGAGG CCAGAGCTGA
TAAGGAAGGC GAAATTAAGA GTATTTACCC TTCCCTAACA CAGAACACAC AGAATAAGAA GCAGACATCG
AATCAGACAA ACACTCAATC ATTACCAGCT ATCACTACTC AAGATGGTAC TCCTAGGTTT GATCCTGACC
TCATGAAGCA GCTTAAGATC TGGTCAGACG CCACTGAAAG AAATGGGGTT GACCTTCATG CAGTGAATAT
ATTAGGGGTC ATTACAGCAA ACCTAGTACA GGAAGAAATT AAACTCCTCT TGAATAGTAC ACCCAAGTGG
AGATTAGATG TACAACTTAT AGAATCAAAA GTAAGAGAGA AAGAAAATGC CCACAGAACG TGGAAACAGC
ATCATCCAGA AGCCCCAAAA ACAGATGAAA TCATCGGTAA GGGGCTTAGT TCTGCTGAAC AAGCCACCCT
GATCTCAGTA GAATGCAGAG AAACTTTCAG ACAGTGGGTG CTGCAGGCAG CTATGGAGGT GGCACAGGCA
AAACATGCTA CCCCAGGTCC CATCAACATT CATCAGGGAC CCAAGGAGCC GTACACAGAC TTTATAAATA
GATTAGTGGC AGCCCTTGAA GGTATGGCGG CTCCAGAAAC CACAAAAGAA TACTTACTCC AACATCTATC
TATTGATCAT GCCAATGAAG ACTGCCAGTC TATTCTAAGA CCTTTGGGAC CCAACACCCC AATGGAGAAA
AAATTAGAAG CATGTAGGGT AGTGGGATCT CAGAAATCAA AGATGCAATT TTTGGTAGCA GCTATGAAAG
AAATGGGGAT CCAATCACCA ATTCCAGCAG TCTTGCCTCA CACACCAGAA GCATATGCCT CCCAAACCTC
AGGGCCCGAG GATGGTAGGA GATGTTACGG ATGTGGGAAG ACAGGACATT TGAAGAGGAA TTGTAAACAG
CAAAAATGCT ACCATTGTGG CAAACCTGGC CACCAAGCAA GAAACTGCAG GTCAAAAAAC GGGAAGTGCT
CCTCTGCCCC TTATGGGCAG AGGAGCCAAC CACAGAACAA TTTTCACCAG AGCAACATGA GTTCTGTGAC
CCCATCTGCA CCCCCTCTTA TATTAGATTA GACAAACAGC CTTTTATAAA GGTGTTCATA GGGGGAAGAT
GGGTAAAAGG GTTAGTAGAC ACTGGAGCAG ATGAGGTAGT GCTTAAGAAC ATACATTGGG ATAGGATAAA
AGGGTATCCA GGGACACCAA TTAAACAAAT TGGGGTAAAT GGAGTAAATG TGGCCAAAAG GAAGACCCAC
GTAGAGTGGA GATTTAAGGA TAAGACTGGG ATAATTGATG TCTTGTTCTC AGATACTCCT GTAAACCTTT
TTGGGAGATC TCTTCTACGT AGCATAGTGA CTTGCTTCAC CCTACTTGTT CACACAGAAA AAATCGAACC
CCTACCCGTC AAGGTAAGGG GACCAGGGCC TAAGGTACCC CAGTGGCCCT TGACAAAAGA AAAGTATCAG
GCTCTTAAGG AAATTGTGAA AGATCTTTTA GCAGAAGGAA AAATTTCCGA AGCTGCTTGG GATAACCCAT
ATAATACCCC AGTTTTTGTT ATAAAGAAAA AGGGAACGGG AAGATGGAGG ATGCTAATGG ATTTTAGGGA
ATTAAATAAG ATAACAGTTA AAGGACAAGA ATTCTCTACA GGCTTACCTT ACCCTCCAGG AATTAAGGAA
TGTGAACACT TAACTGCAAT AGATATAAAA GATGCCTACT TTACTATCCC TTTACATGAG GACTTTAGAC
CCTTTACAGC CTTCTCTGTA GTCCCTGTAA ATCGAGAAGG ACCTATAGAG AGGTTCCAGT GGAATGTTCT
ACCACAAGGA TGGGTATGTA GCCCTGCCAT TTATCAGACT ACCACCCAGA AGATTATAGA AAACATTAAA
AAGAGTCACC CAGATGTCAT GTTGTATCAA TATATGGATG ATTTGTTGAT TGGGTCTAAT AGGGATGATC
ATAAGCAAAT AGTGCAGGAA ATCAGGGATA AGTTAGGATC ATATGGTTTC AAGACTCCAG ATGAAAAGGT
CCAGGAAGAG AGAGTGAAAT GGATCGGTTT TGAGCTCACA CCCAAGAAAT GGCGTTTTCA GCCCAGGCAA
CTAAAGATAA AAAACCCACT CACAGTAAAT GAATTACAGC AATTAGTAGG TAATTGTGTT TGGGTACAGC
CAGAAGTAAA AATCCCTCTA TACCCCTTAA CCGATCTACT GAGGGATAAG ACCAATCTCC AAGAAAAGAT
ACAACTAACA CCAGAAGCCA TCAAGTGTGT AGAAGAATTC AATCTAAAAC TAAAAGATCC AGAATGGAAA
GATAGAATAA GAGAAGGAGC AGAATTAGTC ATAAAAATAC AGATGGTTCC TCGGGGCATA GTATTTGATC
TGTTGCAAGA TGGAAATCCC ATATGGGGAG GAGTAAAAGG ACTAAATTAT GATCATTCAA ACAAAATAAA
AAAGATACTT AGAACTATGA ATGAGCTGAA CAGAACAGTG GTAATTATGA CAGGAAGAGA AGCTAGTTTC
CTGCTTCCTG GGTCTTCTGA AGATTGGGAA GCGGCACTCC AGAAGGAAGA AAGTCTAACA CAAATATTCC
CAGTAAAGTT TTATAGGCAC TCCTGCAGAT GGACCTCCAT ATGTGGGCCA GTAAGAGAAA ATCTAACCAC
CTACTATACT GACGGAGGGA AGAAAGGGAA AACAGCTGCA GCAGTATATT GGTGTGAAGG AAGGACTAAG
TCAAAGGTAT TTCCAGGAAC CAATCAACAG GCGGAATTGA AGGCCATATG CATGGCTCTC TTGGATGGAC
CACCAAAAAT GAATATCATA ACAGATAGTA GATACGCCTA TGAGGGAATG AGAGAAGAAC CAGAAACGTG
GGCCAGGGAA GGAATCTGGC TGGAGATTGC CAAGATATTG CCCTTTAAGC AGTACGTGGG GGTCGGGTGG
GTGCCTGCAC ATAAAGGGAT AGGAGGAAAT ACAGAGGCAG ATGAAGGAGT TAAGAAAGCC TTAGAACAGA
TGGCCCCGTG TAGCCCTCCT GAGGCCATTC TATTAAAACC AGGAGAAAAA CAAAATCTGG AGACAGGGAT
CTACATGCAG GGGCTTAGAC CACAAAGCTT CCTCCCAAGA GCAGACTTAC CAGTAGCCAT CACAGGAACC
ATGGTAGATT CAGAGCTACA GCTACAGCTA CTTAACATAG GAACTGAGCA TATAAGAATC CAAAAAGATG
AGGTCTTCAT GACCTGTTTC CTAGAAAATA TCCCCTCAGC CACTGAAGAT CATGAGAGAT GGCATACCTC
ACCAGACATT TTGGTTAGGC AGTTCCATCT CCCTAAGAGA ATAGCTAAAG AGATAGTAGC CAGATGCCAA
GAATGTAAAA GGACAACCAC TAGCCCAGTC AGAGGAACAA ACCCCAGAGG TCGATTCTTA TGGCAGATGG
ACAATACTCA CTGGAATAAA ACAATTATTT GGGTAGCAGT AGAGACAAAT TCAGGATTAG TGGAAGCTCA
GGTGATCCCT GAAGAAACAG CACTACAAGT AGCTCTCTGC ATTTTACAGC TAATCCAGAG ATATACAGTT
CTTCACTTAC ATAGTGACAA CGGGCCGTGC TTTACTGCAC ACAGGATAGA AAATCTATGT AAGTATCTGG
GGATCACAAA AACTACGGGA ATACCCTACA ACCCACAATC CCAGGGAGTT GTAGAAAGAG CCCACAGAGA
TCTAAAAGAC AGATTGGCAG CTTATCAGGG AGATTGTGAA ACCGTAGAAG CAGCCCTTAG CCTCGCATTA
GTTTCTTTAA ATAAAAAAAG AGGGGGAATA GGGGGCCATA CACCATATGA AATATACCTA GAATCAGAAC
ATACCAAATA CCAAGACCAA CTAGAACAAC AATTTTCAAA ACAAAAAATT GAAAAGTGGT GTTACGTAAG
GAACAGAAGA AAGGAATGGA AAGGACCCTA CAAAGTGTTG TGGGACGGAG ACGGGGCAGC AGTAATAGAG
GAAGAGGGAA AAACAGCCTT ATATCCACAC CGTCATATGC GCTTCATCCC CCCCCCAGAT TCAGATATCC
AAGATGGGAG TTCGTGA
Products
| Product | gag |
| Description | gag polyprotein |
MKRRELEKKL RKVRVTPQQD KYYTIGNLQW AIRMINLMGI KCVCDEECSA AEVALIITQF SALDLENSPI
RGKEEVAIKN TLKVFWSLLA GYKPESTETA LGYWEAFTYR EREARADKEG EIKSIYPSLT QNTQNKKQTS
NQTNTQSLPA ITTQDGTPRF DPDLMKQLKI WSDATERNGV DLHAVNILGV ITANLVQEEI KLLLNSTPKW
RLDVQLIESK VREKENAHRT WKQHHPEAPK TDEIIGKGLS SAEQATLISV ECRETFRQWV LQAAMEVAQA
KHATPGPINI HQGPKEPYTD FINRLVAALE GMAAPETTKE YLLQHLSIDH ANEDCQSILR PLGPNTPMEK
KLEACRVVGS QKSKMQFLVA AMKEMGIQSP IPAVLPHTPE AYASQTSGPE DGRRCYGCGK TGHLKRNCKQ
QKCYHCGKPG HQARNCRSKN GKCSSAPYGQ RSQPQNNFHQ SNMSSVTPSA PPLILD
| Product | gag-pol |
| Description | gag capsid polyprotein, RNA polymerase. |
| Modifications | 1320..1320:ribosomal_frameshift |
MKRRELEKKL RKVRVTPQQD KYYTIGNLQW AIRMINLMGI KCVCDEECSA AEVALIITQF SALDLENSPI
RGKEEVAIKN TLKVFWSLLA GYKPESTETA LGYWEAFTYR EREARADKEG EIKSIYPSLT QNTQNKKQTS
NQTNTQSLPA ITTQDGTPRF DPDLMKQLKI WSDATERNGV DLHAVNILGV ITANLVQEEI KLLLNSTPKW
RLDVQLIESK VREKENAHRT WKQHHPEAPK TDEIIGKGLS SAEQATLISV ECRETFRQWV LQAAMEVAQA
KHATPGPINI HQGPKEPYTD FINRLVAALE GMAAPETTKE YLLQHLSIDH ANEDCQSILR PLGPNTPMEK
KLEACRVVGS QKSKMQFLVA AMKEMGIQSP IPAVLPHTPE AYASQTSGPE DGRRCYGCGK TGHLKRNCKQ
QKCYHCGKPG HQARNCRSKN REVLLCPLWA EEPTTEQFSP EQHEFCDPIC TPSYIRLDKQ PFIKVFIGGR
WVKGLVDTGA DEVVLKNIHW DRIKGYPGTP IKQIGVNGVN VAKRKTHVEW RFKDKTGIID VLFSDTPVNL
FGRSLLRSIV TCFTLLVHTE KIEPLPVKVR GPGPKVPQWP LTKEKYQALK EIVKDLLAEG KISEAAWDNP
YNTPVFVIKK KGTGRWRMLM DFRELNKITV KGQEFSTGLP YPPGIKECEH LTAIDIKDAY FTIPLHEDFR
PFTAFSVVPV NREGPIERFQ WNVLPQGWVC SPAIYQTTTQ KIIENIKKSH PDVMLYQYMD DLLIGSNRDD
HKQIVQEIRD KLGSYGFKTP DEKVQEERVK WIGFELTPKK WRFQPRQLKI KNPLTVNELQ QLVGNCVWVQ
PEVKIPLYPL TDLLRDKTNL QEKIQLTPEA IKCVEEFNLK LKDPEWKDRI REGAELVIKI QMVPRGIVFD
LLQDGNPIWG GVKGLNYDHS NKIKKILRTM NELNRTVVIM TGREASFLLP GSSEDWEAAL QKEESLTQIF
PVKFYRHSCR WTSICGPVRE NLTTYYTDGG KKGKTAAAVY WCEGRTKSKV FPGTNQQAEL KAICMALLDG
PPKMNIITDS RYAYEGMREE PETWAREGIW LEIAKILPFK QYVGVGWVPA HKGIGGNTEA DEGVKKALEQ
MAPCSPPEAI LLKPGEKQNL ETGIYMQGLR PQSFLPRADL PVAITGTMVD SELQLQLLNI GTEHIRIQKD
EVFMTCFLEN IPSATEDHER WHTSPDILVR QFHLPKRIAK EIVARCQECK RTTTSPVRGT NPRGRFLWQM
DNTHWNKTII WVAVETNSGL VEAQVIPEET ALQVALCILQ LIQRYTVLHL HSDNGPCFTA HRIENLCKYL
GITKTTGIPY NPQSQGVVER AHRDLKDRLA AYQGDCETVE AALSLALVSL NKKRGGIGGH TPYEIYLESE
HTKYQDQLEQ QFSKQKIEKW CYVRNRRKEW KGPYKVLWDG DGAAVIEEEG KTALYPHRHM RFIPPPDSDI
QDGSS
Publication
- Bekaert M, Rousset JP. (2005) An extended signal involved in eukaryotic -1 frameshifting operates through modification of the E site tRNA. Mol Cell. 17(1):61-68. [abstract]