Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200525"

Accession numberr200525 [export]
Locus namegag-pro
Recode1 namepro_m_vir_mmtv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismMouse mammary tumor virus [details]
AcronymMMTV

Sequence

GenBank IDsNC_001503
SequenceRNA of 2583 nucleotides [sequence]
OrganisationPseudoknot structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,770)
Descriptionapprox. 20% frameshifting with reporter gene in S. cerevisiae. This is the CDS part of the sequence.
ModelsHMM
ATGGGGGTCT CGGGATCAAA AGGGCAGAAA CTCTTTGTTT CTGTTCTACA AAGACTCCTC TCAGAGAGGG GTCTTCATGT GAAAGAGAGC AGTGCAATAG AGTTTTATCA GTTCCTAATA AAGGTCTCTC CTTGGTTTCC CGAAGAAGGA GGATTAAATT TACAAGATTG GAAAAGGGTG GGAAGAGAGA TGAAGAGGTA CGCAGCAGAA CATGGGACGG ATAGTATACC AAAGCAGGCT TACCCCATTT GGCTTCAGTT GAGAGAGATA CTGACAGAGC AATCAGACTT GGTTTTGTTA TCTGCAGAAG CCAAGTCCGT GACTGAAGAG GAATTAGAGG AAGGTTTAAC CGGACTACTA TCGACAAGTT CACAGGAAAA AACTTATGGG ACTAGGGGAA CAGCATATGC AGAAATAGAT ACAGAGGTAG ACAAGCTGTC TGAACATATT TATGATGAAC CATATGAAGA AAAGGAGAAG GCAGATAAAA ATGAGGAAAA GGACCATGTT AGAAAAATAA AGAAGGTAGT ACAAAGAAAA GAAAATAGTG AGGGTAAGAG AAAAGAGAAG GATTCAAAGG CCTTTTTAGC CACAGATTGG AACGATGATG ACCTGTCCCC TGAGGATTGG GACGATTTAG AGGAACAAGC GGCACATTAT CATGATGATG ATGAGCTAAT CCTTCCAGTA AAAAGGAAGG TGGTTAAGAA GAAACCTCAG GCACTCAGAA GGAAACCCCT GCCTCCGGTG GGTTTTGCAG GAGCGATGGC AGAGGCCAGG GAAAAAGGAG ATTTGACTTT TACGTTTCCT GTAGTTTTTA TGGGAGAGAG TGATGAAGAT GACACGCCTG TTTGGGAACC GCTGCCATTG AAAACCTTAA AGGAATTGCA ATCGGCAGTT AGGACCATGG GACCATCTGC TCCCTACACC CTGCAGGTGG TAGACATGGT GGCTAGTCAA TGGCTCACCC CGAGTGACTG GCACCAAACA GCCAGAGCTA CCTTGTCTCC TGGAGACTAT GTTTTATGGA GAACTGAATA TGAAGAGAAA AGTAAAGAAA TGGTACAAAA GGCTGCAGGC AAGCGAAAGG GCAAGGTCTC TCTTGATATG TTACTGGGGA CTGGCCAATT CCTGTCCCCT TCTTCTCAGA TAAAATTGTC TAAGGATGTC TTAAAAGATG TCACCACAAA TGCTGTGTTA GCATGGAGGG CCATTCCGCC TCCTGGAGTT AAAAAGACTG TATTAGCAGG ATTAAAACAG GGAAATGAAG AGTCTTATGA GACTTTCATT TCAAGGCTCG AGGAAGCTGT TTACCGAATG ATGCCCAGAG GGGAAGGGTC GGATATATTG ATCAAACAAT TGGCGTGGGA GAATGCAAAT TCATTGTGTC AGGATCTCAT CCGCCCAATA CGTAAAACAG GAACTATACA GGATTATATT CGTGCTTGTC TGGACGCTTC TCCCGCAGTT GTTCAGGGTA TGGCATATGC AGCAGCCATG AGAGGACAAA AGTATTCTAC CTTTGTAAAG CAAACATATG GTGGGGGAAA AGGAGGTCAA GGAGCAGAAG GGCCAGTTTG TTTTTCCTGT GGTAAGACAG GACACATCAG AAAAGACTGT AAGGATGAAA AGGGCTCAAA AAGGGCCCCT CCTGGGCTCT GCCCCAGATG TAAGAAAGGC TATCACTGGA AGAGTGAGTG TAAATCTAAA TTTGACAAAG ATGGGAATCC ACTTCCTCCC TTGGAAACTA ATGCTGAAAA TTCAAAAAAC TTGTAAAGGG GCAGTCCCCT AGCCCCGCTC AAAATGGGGG ATGGAGTTAA GGGCTCAGGA TTAAATCCTG AAGCCCCACC TTTCACAATA CATGATTTGC CTCGAGGCAC CCCTGGAAGT GCAGGTTTAG ACCTGTCATC ACAGAAGGAT TTGATCCTCT CTCTAGAAGA TGGAGTATCA TTGGTACCCA CCTTAGTGAA AGGCACCCTC CCTGAAGGGA CTACTGGACT AATAATAGGT AGAAGTTCTA ATTATAAAAA GGGACTTGAG GTTTTACCAG GAGTCATTGA CTCCGATTTC CAAGGAGAAA TCAAGGTTAT GGTTAAGGCC GCAAAAAATG CGGTCATCAT TCACAAAGGA GAAAGAATAG CACAACTGCT GTTGCTGCCA TATTTAAAAT TACCCAATCC TGTAATCAAG GAAGAACGAG GCTCAGAAGG CTTCGGATCA ACAAGTCATG TGCATTGGGT GCAGGAAATA AGTGACTCCA GACCCATGCT TCACATTTAC TTAAATGGAA GAAGATTCCT CGGTCTCTTG GATACCGGGG CAGATAAAAC TTGCATAGCA GGCAGAGACT GGCCAGCTAA TTGGCCCATT CACCAAACTG AGAGTTCTCT TCAAGGTTTA GGCATGGCCT GTGGGGTGGC GCGTAGTAGT CAGCCACTCC GTTGGCAACA TGAGGATAAA TCAGGAATTA TACATCCTTT TGTGATCCCT ACACTGCCTT TCACCTTATG GGGAAGAGAT ATTATGAAAG ATATAAAGGT CAGATTGATG ACAGACTCAC CAGATGATTC ACAGGATTTA TGA

Products

Productgag
Descriptiongag polyprotein
MGVSGSKGQK LFVSVLQRLL SERGLHVKES SAIEFYQFLI KVSPWFPEEG GLNLQDWKRV GREMKRYAAE HGTDSIPKQA YPIWLQLREI LTEQSDLVLL SAEAKSVTEE ELEEGLTGLL STSSQEKTYG TRGTAYAEID TEVDKLSEHI YDEPYEEKEK ADKNEEKDHV RKIKKVVQRK ENSEGKRKEK DSKAFLATDW NDDDLSPEDW DDLEEQAAHY HDDDELILPV KRKVVKKKPQ ALRRKPLPPV GFAGAMAEAR EKGDLTFTFP VVFMGESDED DTPVWEPLPL KTLKELQSAV RTMGPSAPYT LQVVDMVASQ WLTPSDWHQT ARATLSPGDY VLWRTEYEEK SKEMVQKAAG KRKGKVSLDM LLGTGQFLSP SSQIKLSKDV LKDVTTNAVL AWRAIPPPGV KKTVLAGLKQ GNEESYETFI SRLEEAVYRM MPRGEGSDIL IKQLAWENAN SLCQDLIRPI RKTGTIQDYI RACLDASPAV VQGMAYAAAM RGQKYSTFVK QTYGGGKGGQ GAEGPVCFSC GKTGHIRKDC KDEKGSKRAP PGLCPRCKKG YHWKSECKSK FDKDGNPLPP LETNAENSKN L
Productgag-pro
Descriptiongag capsid polyprotein, protease.
Modifications1770..1770:ribosomal_frameshift
MGVSGSKGQK LFVSVLQRLL SERGLHVKES SAIEFYQFLI KVSPWFPEEG GLNLQDWKRV GREMKRYAAE HGTDSIPKQA YPIWLQLREI LTEQSDLVLL SAEAKSVTEE ELEEGLTGLL STSSQEKTYG TRGTAYAEID TEVDKLSEHI YDEPYEEKEK ADKNEEKDHV RKIKKVVQRK ENSEGKRKEK DSKAFLATDW NDDDLSPEDW DDLEEQAAHY HDDDELILPV KRKVVKKKPQ ALRRKPLPPV GFAGAMAEAR EKGDLTFTFP VVFMGESDED DTPVWEPLPL KTLKELQSAV RTMGPSAPYT LQVVDMVASQ WLTPSDWHQT ARATLSPGDY VLWRTEYEEK SKEMVQKAAG KRKGKVSLDM LLGTGQFLSP SSQIKLSKDV LKDVTTNAVL AWRAIPPPGV KKTVLAGLKQ GNEESYETFI SRLEEAVYRM MPRGEGSDIL IKQLAWENAN SLCQDLIRPI RKTGTIQDYI RACLDASPAV VQGMAYAAAM RGQKYSTFVK QTYGGGKGGQ GAEGPVCFSC GKTGHIRKDC KDEKGSKRAP PGLCPRCKKG YHWKSECKSK FDKDGNPLPP LETNAENSKN LVKGQSPSPA QNGGWS

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