Recode v. 2.0 / Database of translational recoding events.
Details for "r200526"
| Accession number | r200526 [export] |
| Locus name | gag-pro |
| Recode1 name | pro_m_vir_mpmv |
| Description | viral or mobile polyprotein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Mason-Pfizer monkey virus [details] |
| Acronym | MPMV |
Sequence
| GenBank IDs | NC_001550 |
| Sequence | RNA of 2735 nucleotides [sequence] |
| Organisation | Pseudoknot structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)
|
Recoding event
| Event type | -1 Frameshifting (position: 1,824) |
| Description | this is the CDS part of the sequence. |
| Models | HMM |
ATGGGGCAAG AATTAAGCCA GCATGAACGT TATGTAGAAC AATTGAAGCA GGCTTTAAAG ACACGGGGAG
TAAAGGTTAA ATATGCTGAT CTTTTGAAAT TTTTTGATTT TGTGAAGGAT ACTTGTCCTT GGTTTCCGCA
AGAGGGAACC ATAGATATTA AACGGTGGCG TAGAGTAGGC GACTGTTTCC AAGACTATTA CAATACTTTT
GGCCCGGAGA AAGTCCCAGT AACTGCATTC TCTTACTGGA ACTTAATTAA AGAATTGATA GATAAGAAAG
AAGTTAACCC ACAAGTAATG GCTGCCGTAG CCCAAACTGA AGAAATTTTA AAAAGTAATT CTCAAACAGA
CCTCACAAAG ACCTCTCAAA ACCCAGACTT GGACCTTATT TCCCTTGATA GCGACGATGA AGGAGCTAAA
AGTTCCTCTC TACAAGATAA AGGTTTATCA AGTACTAAAA AACCAAAAAG ATTCCCAGTT CTGTTAACAG
CACAAACTAG TAAAGACCCT GAAGACCCCA ACCCCTCAGA GGTAGACTGG GACGGCTTGG AAGATGAGGC
AGCGAAATAT CATAATCCCG ATTGGCCTCC CTTCCTAACC CGTCCACCTC CTTACAATAA AGCTACTCCT
TCCGCACCCA CTGTAATGGC GGTTGTTAAT CCAAAAGAGG AGCTCAAAGA AAAAATTGCT CAATTAGAGG
AACAGATTAA ATTAGAAGAG TTACACCAGG CACTAATTTC CAAATTACAA AAACTAAAAA CAGGGAATGA
AACTGTAACT CACCCAGACA CAGCAGGAGG CCTTTCTCGC ACGCCTCACT GGCCAGGGCA ACATATCCCT
AAAGGAAAAT GTTGCGCCAG TCGAGAAAAG GAAGAACAAA TCCCAAAAGA TATTTTCCCA GTGACTGAAA
CCGTTGATGG GCAAGGTCAA GCCTGGAGAC ACCATAATGG TTTTGATTTT GCCGTCATAA AAGAATTAAA
AACAGCTGCT TCCCAATATG GGGCTACTGC CCCATACACA TTAGCCATAG TGGAATCTGT AGCGGACAAT
TGGCTTACCC CTACAGATTG GAATACGCTT GTTAGGGCAG TCCTCTCAGG AGGAGATCAC TTACTGTGGA
AATCTGAGTT TTTTGAAAAT TGCAGAGATA CGGCTAAAAG AAACCAACAA GCCGGTAATG GCTGGGATTT
TGACATGTTA ACAGGTTCGG GTAATTATTC CAGCACCGAT GCACAAATGC AGTATGATCC AGGATTGTTT
GCTCAAATTC AAGCGGCTGC TACAAAAGCC TGGAGAAAAC TTCCCGTTAA GGGAGACCCA GGAGCCTCCC
TTACAGGAGT CAAACAAGGA CCCGATGAGC CATTTGCAGA TTTCGTACAC AGACTTATAA CAACTGCTGG
GAGAATCTTT GGAAGTGCTG AGGCCGGTGT AGACTATGTA AAACAACTAG CATATGAAAA TGCTAATCCA
GCTTGTCAGG CAGCCATTCG CCCCTATAGA AAGAAGACAG ATTTAACTGG CTATATCCGT CTTTGCTCGG
ATATTGGGCC CTCTTATCAG CAAGGCCTGG CCATGGCCGC CGCCTTTAGC GGGCAGACTG TAAAAGATTT
TCTTAACAAC AAAAATAAAG AGAAAGGAGG GTGTTGCTTT AAATGCGGTA AAAAAGGACA CTTTGCAAAA
AATTGTCATG AACATGCACA TAACAATGCT GAACCAAAAG TTCCCGGACT CTGCCCTAGA TGTAAAAGAG
GGAAACATTG GGCCAATGAA TGCAAATCCA AAACTGATAA TCAAGGAAAC CCAATACCAC CCCATCAGGG
AAACGGGATG AGGGGCCAGC CCCAGGCCCC AAAGCAAGCC TGTGGGGCAG TCAGCTTTGT TCCAGCCAAC
AAAAACAACC CATTTCAAAG CTTACCAGAG CCACCCCAGG AAGTGCAGGA TTGGACCTCT GTTCCACCTC
CCACACAGTA TTAACGCCTG AAATGGGGCC CCAAGCGTTA AGCACTGGAA TATATGGACC ACTGCCTCCC
AACACTTTTG GATTAATCCT AGGCCGAAGT AGCATTACTA TGAAGGGTCT ACAAGTTTAT CCAGGAGTAA
TTGATAATGA CTATACCGGA GAAATTAAAA TTATGGCAAA AGCTGTTAAC AATATTGTTA CTGTCTCTCA
AGGCAACAGA ATAGCTCAAT TAATCCTCCT GCCTCTGATC GAGACAGACA ATAAGGTACA ACAACCTTAT
AGAGGACAAG GAAGTTTTGG ATCCTCAGAC ATATATTGGG TCCAACCTAT TACTTGTCAA AAACCTTCCT
TAACATTATG GTTAGATGAC AAAATGTTCA CAGGCTTAAT AGATACGGGG GCTGATGTCA CAATTATCAA
GCTGGAGGAC TGGCCTCCTA ATTGGCCTAT AACAGATACC TTAACCAATT TAAGAGGAAT AGGACAAAGT
AACAACCCTA AACAAAGTTC TAAATATCTT ACTTGGAGAG ATAAAGAAAA CAATTCTGGT CTCATCAAAC
CGTTTGTTAT TCCTAACTTA CCTGTCAATC TTTGGGGCCG AGATTTACTT TCTCAAATGA AAATTATGAT
GTGTAGCCCC AATGACATAG TAACTGCTCA AATGTTAGCC CAGGGCTACA GCCCAGGAAA AGGGTTAGGA
AAAAAGGAAA ATGGCATTCT ACATCCTATC CCAAATCAAG GACAATCTAA CAAAAAAGGT TTTGGAAATT
TTTAA
Products
| Product | gag |
| Description | gag-pro fusion protein |
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF
GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KSNSQTDLTK TSQNPDLDLI SLDSDDEGAK
SSSLQDKGLS STKKPKRFPV LLTAQTSKDP EDPNPSEVDW DGLEDEAAKY HNPDWPPFLT RPPPYNKATP
SAPTVMAVVN PKEELKEKIA QLEEQIKLEE LHQALISKLQ KLKTGNETVT HPDTAGGLSR TPHWPGQHIP
KGKCCASREK EEQIPKDIFP VTETVDGQGQ AWRHHNGFDF AVIKELKTAA SQYGATAPYT LAIVESVADN
WLTPTDWNTL VRAVLSGGDH LLWKSEFFEN CRDTAKRNQQ AGNGWDFDML TGSGNYSSTD AQMQYDPGLF
AQIQAAATKA WRKLPVKGDP GASLTGVKQG PDEPFADFVH RLITTAGRIF GSAEAGVDYV KQLAYENANP
ACQAAIRPYR KKTDLTGYIR LCSDIGPSYQ QGLAMAAAFS GQTVKDFLNN KNKEKGGCCF KCGKKGHFAK
NCHEHAHNNA EPKVPGLCPR CKRGKHWANE CKSKTDNQGN PIPPHQGNGM RGQPQAPKQA CGAVSFVPAN
KNNPFQSLPE PPQEVQDWTS VPPPTQY
| Product | gag-pro |
| Description | gag capsid polyprotein, protease. |
| Modifications | 1824..1824:ribosomal_frameshift |
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF
GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KSNSQTDLTK TSQNPDLDLI SLDSDDEGAK
SSSLQDKGLS STKKPKRFPV LLTAQTSKDP EDPNPSEVDW DGLEDEAAKY HNPDWPPFLT RPPPYNKATP
SAPTVMAVVN PKEELKEKIA QLEEQIKLEE LHQALISKLQ KLKTGNETVT HPDTAGGLSR TPHWPGQHIP
KGKCCASREK EEQIPKDIFP VTETVDGQGQ AWRHHNGFDF AVIKELKTAA SQYGATAPYT LAIVESVADN
WLTPTDWNTL VRAVLSGGDH LLWKSEFFEN CRDTAKRNQQ AGNGWDFDML TGSGNYSSTD AQMQYDPGLF
AQIQAAATKA WRKLPVKGDP GASLTGVKQG PDEPFADFVH RLITTAGRIF GSAEAGVDYV KQLAYENANP
ACQAAIRPYR KKTDLTGYIR LCSDIGPSYQ QGLAMAAAFS GQTVKDFLNN KNKEKGGCCF KCGKKGHFAK
NCHEHAHNNA EPKVPGLCPR CKRGKHWANE CKSKTDNQGN PIPPHQGNRD EGPAPGPKAS LWGSQLCSSQ
QKQPISKLTR ATPGSAGLDL CSTSHTVLTP EMGPQALSTG IYGPLPPNTF GLILGRSSIT MKGLQVYPGV
IDNDYTGEIK IMAKAVNNIV TVSQGNRIAQ LILLPLIETD NKVQQPYRGQ GSFGSSDIYW VQPITCQKPS
LTLWLDDKMF TGLIDTGADV TIIKLEDWPP NWPITDTLTN LRGIGQSNNP KQSSKYLTWR DKENNSGLIK
PFVIPNLPVN LWGRDLLSQM KIMMCSPNDI VTAQMLAQGY SPGKGLGKKE NGILHPIPNQ GQSNKKGFGN
F
Publications
- Hatfield DL, Levin JG, Rein A, Oroszlan S. (1992) Translational suppression in retroviral gene expression. Adv Virus Res. 41:193-239. [abstract]
- Thayer RM, Power MD, Bryant ML, Gardner MB, Barr PJ, Luciw PA. (1987) Sequence relationships of type D retroviruses which cause simian acquired immunodeficiency syndrome. Virology. 157(2):317-329. [abstract]
- Bekaert M, Rousset JP. (2005) An extended signal involved in eukaryotic -1 frameshifting operates through modification of the E site tRNA. Mol Cell. 17(1):61-68. [abstract]