Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200527"

Accession numberr200527 [export]
Locus namegag-pol
Recode1 namepol_m_vir_alv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismAvian leukosis virus [details]
AcronymALV

Sequence

GenBank IDsNC_001408
SequenceRNA of 4811 nucleotides [sequence]
OrganisationTrans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 2,103)
Descriptionpotentional secondary structure downstream of frameshifting site. This is the CDS part of the sequence.
ModelsHMM
ATGGAAGCCG TCATTAAGGT GATTTCGTCC GCGTGTAAAA CCTATTGCGG GAAAATCTCT CCTTCTAAGA AGGAAATAGG GGCCATGTTG TCCCTGTTAC AAAAGGAAGG GTTGCTTATG TCTCCCTCAG ATTTATATTC CCCGGGGTCC TGGGATCCCA TCACTGCGGC GCTCTCCCAG CGGGCAATGG TACTTGGGAA ATCGGGAGAG TTAAAAACCT GGGGATTGGT TTTGGGGGCA TTGAAGGCGG CTCGAGAGGA ACAGGTTACA TCTGAGCAAG CAAAGTTTTG GTTGGGATTA GGGGGAGGGA GGGTCTCTCC CCCAGGTCCG GAGTGCATCG AGAAACCAGC AACGGAGCGG CGAATCGACA AAGGGGAGGA AGTGGGAGAA ACAACTGCGC AGCGAGATGC GAAGATGGCG CCGGAGAAAA TGGCCACACC TAAAACCGTT GGCACATCCT GCTATCAGTG CGGAACAGCT ACTGGCTGTA ATTGCGCCAC AGCCTCGGCC CCTCCTCCTC CTTATGTGGG GAGTGGTTTG TATCCTTCCC TGGCGGGGGT GGGAGAGCAG CAGGGCCAGG GGGGTGACAC ACCTTGGGGG GCGGAACAGC CAAGGGCGGA GCCAGGGCAC GCGGGTCTGG CCCCTGGGCC GGCCCTGACT GACTGGGCAA GGATCAGGGA GGAGCTTGCG AGTACAGGTC CGCCCGTGGT GGCCATGCCT GTAGTGATTA AGACAGAGGG ACCCGCCTGG ACCCCTCTGG AGCCAAAATT GATCACAAGA CTGGCTGATA CGGTCAGGAC CAAGGGCTTA CGATCCCCGA TCACTATGGC AGAAGTGGAA GCGCTCATGT CCTCCCCGTT GCTGCCGCAT GACGTCACGA ATCTAATGAG AGTGATTTTA GGACCTGCCC CATATGCCTT ATGGATGGAC GCTTGGGGAG TCCAACTCCA GACGGTTATA GCGGCAGCCA CTCGCGACCC CCGACACCCA GCGAACGGTC AAGGGCGGGG GGAACGGACT AACTTGGATC GATTAAAGGG CTTAGCTGAT GGGATGGTGG GCAACCCACA GGGTCAGGCC GCATTATTAA GACCGGGGGA ATTGGTTGCT ATTACGGCGT CGGCTCTCCA GGCGTTTAGA GAAGTTGCCC GGCTGGCGGA ACCTGCAGGT CCATGGGCGG ACATCACGCA GGGACCATCT GAGTCCTTTG TTGATTTTGC CAATCGGCTT ATAAAGGCGG TTGAGGGGTC AGATCTCCCG CCTTCCGCGC GGGCTCCGGT GATCATTGAC TGCTTTAGGC AGAAGTCACA GCCAGATATT CAGCAGCTTA TACGGGCAGC ACCCTCCACG CTGACCACCC CAGGAGAGAT AATCAAATAT GTGCTAGACA GGCAGAAGAT TGCCCCTCTT ACGGATCAAG GCATAGCCGC GGCCATGTCG TCTGCTATCC AGCCCTTAGT TATGGCAGTA GTCAATAGAG AGAGGGATGG ACAAACTGGG TCGGGTGGTC GTGCCCGAGG GCTCTGCTAC ACTTGTGGAT CCCCGGGACA TTATCAGGCG CAGTGCCCGA AAAAACGAAA GTCAGGAAAC AGCCGTGAGC GATGTCAGCT GTGTGACGGG ATGGGACACA ACGCTAAACA GTGCAGAAGG CGGGATGGCA ACCAGGGCCA ACGCCCAGGA AAAGGCCTCT CTTCGGGGTC GTGGCCCGTC TCTGAGCAGC CTGCCGTCTC GTTAGCGATG ACAATGGAAC ATAAAGATCG CCCCTTGGTT AGGGTCATTC TGACTAACAC TGGGAGTCAT CCGGTCAAAC AGCGTTCGGT GTATATCACC GCGCTGTTGG ACTCTGGAGC GGACATCACT ATTATTTCAG AGGAGGACTG GCCCACCGAT TGGCCAGTGA TGGAGGCCGC GAACCCGCAG ATCCATGGGA TAGGAGGGGG AATTCCCATG CGAAAATCCC GGGATATGAT AGAGGTGGGG GTTATTAACC GAGACGGGTC TTTGGAGCGA CCCCTGCTCC TCTTCCCCGC AGTAGCTATG GTTAGAGGGA GTATCCTAGG AAGAGATTGT CTGCAGGGCC TAGGGCTCCG CTTGACAAAT TTATAGGGAG GGCCACTGTT CTTACTGTTG CGCTACATCT GGCTATTCCG CTCAAATGGA AGCCAGACCA CACGCCTGTG TGGATTGACC AGTGGCCCCT TCCTGAAGGT AAACTTGTAG CGCTAACGCA ATTAGTGGAA AAAGAATTAC AGTTAGGACA TATAGAACCT TCACTTAGTT GTTGGAACAC ACCTGTCTTT GTGATCCGGA AGGCTTCCGG GTCTTATCGC TTATTGCATG ACTTGCGCGC TGTTAACGCC AAGCTTGTTC CTTTTGGGGC CGTCCAACAG GGGGCGCCAG TTCTCTCCGC GCTCCCGCGT GGCTGGCCCC TGATGGTCCT AGACCTCAAG GATTGCTTCT TTTCTATTCC TCTTGCGGAA CAAGATCGCG AAGCTTTTGC ATTTACGCTC CCCTCTGTGA ATAACCAGGC CCCCGCTCGA AGATTCCAAT GGAAGGTCTT GCCCCAAGGG ATGACCTGTT CTCCCACTAT CTGTCAGTTG GTGGTGGGTC AGGTACTTGA GCCCTTGCGA CTCAAGCACC CATCTCTGCG CATGTTGCAT TATATGGATG ATCTTTTGCT AGCCGCCTCA AGTCATGATG GGTTGGAAGC GGCAGGGGAG GAGGTTATCA GTACATTGGA AAGAGCCGGG TTCACCATTT CGCCTGATAA GATCCAGAGG GAACCCGGAG TACAATATCT TGGGTACAAG TTAGGCAGTA CGTATGTAGC ACCCGTAGGC CTGGTAGCAG AACCCAGGAT AGCCACCTTG TGGGATGTTC AAAAGCTGGT GGGGTCACTT CAGTGGCTTC GCCCAGCGTT AGGAATCCCG CCACGACTGA TGGGCCCCTT CTATGAGCAG TTACGAGGGT CAGATCCTAA CGAGGCGAGG GAATGGAATC TAGACATGAA AATGGCCTGG AGAGAGATCG TACAGCTTAG CACCACTGCT GCCTTGGAAC GATGGGACCC TGCCCTGCCT TTGGAGGGAG CGGTCGCTAG GTGTGAACAG GGGGCAATAG GGGTCCTGGG ACAGGGACTG TCCACACACC CAAGGCCATG TTTGTGGTTA TTCTCCACCC AACCCACCAA GGCGTTTACT GCTTGGTTAG AAGTGCTCAC CCTTTTGATT ACTAAGCTAC GCGCTTCGGC AGTGCGAACC TTTGGCAAGG AGGTTGATAT CCTCCTGTTG CCTGCATGCT TTCGGGAGGA CCTTCCGCTC CCGGAGGGGA TCCTGTTAGC CCTTAGGGGG TTTGCAGGAA AAATCAGGAG TAGTGACACG CCATCTATTT TTGACATTGC GCGTCCACTG CATGTTTCTC TGAAAGTGAG GGTCACCGAC CACCCTGTAC CGGGACCCAC TGCCTTTACC GACGCCTCCT CAAGCACCCA TAAAGGGGTG GTAGTCTGGA GGGAGGGCCC AAGGTGGGAG ATAAAAGAAA TAGCTGATTT GGGGGCAAGT GTACAACAAC TGGAAGCACG CGCTGTGGCC ATGGCACTTC TGCTGTGGCC GACAACGCCC ACTAATGTAG TGACTGACTC CGCGTTTGTC GCGAAAATGT TACTCAAGAT GGGACAGGAG GGAGTCCCGT CTACAGCGGC GGCTTTTATT TTAGAGGATG CGTTAAGCCA AAGGTCAGCC ATGGCCGCCG TTCTCCACGT GCGGAGTCAT TCTGAAGTGC CAGGGTTTTT CACAGAAGGA AATGACGTGG CAGATAGCCA AGCCACCTTT CAAGCGTATC CCTTGAGAGA GGCTAAAGAT CTTCATACTG CTCTCCATAT TGGACCCCGC GCGCTATCCA AAGCGTGTAA TATATCTATG CAGCAGGCTA GGGAGGTTGT TCAGACCTGC CCGCATTGTA ATTCAGCCCC TGCGTTGGAG GCCGGGGTAA ACCCTAGGGG TTTGGGACCC CTACAGATAT GGCAGACAGA CTTTACGCTT GAGCCTAGAA TGGCCCCCCG TTCCTGGCTC GCTGTTACTG TGGATACCGC CTCATCGGCG ATAGTCGTAA CTCAGCATGG CCGTGTCACA TCGGTTGCTG CACAACATCA TTGGGCCACG GCTATCGCCG TTTTGGGAAG ACCAAAGGCC ATAAAAACAG ATAATGGGTC CTGTTTCACG TCTAAATCCA CGCGAGAGTG GCTCGCGAGA TGGGGGATAG CACACACCAC CGGGATTCCG GGTAATTCCC AGGGTCAAGC TATGGTAGAG CGGGCCAACC GGCTCCTGAA AGATAAGATC CGTGTGCTTG CGGAGGGGGA CGGCTTTATG AAAAGAATCC CCACCAGCAA ACAGGGGGAA CTACTAGCCA AGGCAATGTA TGCCCTCAAT CACTTTGAGC GCGGTGAAAA CACAAAAACA CCGATTCAAA AACACTGGAG ACCTACCGTT CTTACAGAAG GACCCCCGGT TAAAATACGA ATAGAGACAG GGGAGTGGGA AAAAGGATGG AATGTGCTGG TCTGGGGACG AGGTTATGCA GCTGTGAAAA ACAGGGACAC TGATAAGGTT ATTTGGGTAC CCTCTCGGAA AGTTAAACCG GATGTCACCC AAAAGGATGA GGTGACTAAG AAAGATGAGG CGAGCCCTCT TTTTGCAGGC ATTTCTGACT GGATACCCTG GGAAGACGAG CAAGAAGGAC TCCAAGGAGA AACCGCTAGC AACAAGCAAG AAAGACCCGG AGAAGACACC CTTGCTGCCA ACGAGAGTTA A

Products

Productgag
Descriptioncapsid protein
MEAVIKVISS ACKTYCGKIS PSKKEIGAML SLLQKEGLLM SPSDLYSPGS WDPITAALSQ RAMVLGKSGE LKTWGLVLGA LKAAREEQVT SEQAKFWLGL GGGRVSPPGP ECIEKPATER RIDKGEEVGE TTAQRDAKMA PEKMATPKTV GTSCYQCGTA TGCNCATASA PPPPYVGSGL YPSLAGVGEQ QGQGGDTPWG AEQPRAEPGH AGLAPGPALT DWARIREELA STGPPVVAMP VVIKTEGPAW TPLEPKLITR LADTVRTKGL RSPITMAEVE ALMSSPLLPH DVTNLMRVIL GPAPYALWMD AWGVQLQTVI AAATRDPRHP ANGQGRGERT NLDRLKGLAD GMVGNPQGQA ALLRPGELVA ITASALQAFR EVARLAEPAG PWADITQGPS ESFVDFANRL IKAVEGSDLP PSARAPVIID CFRQKSQPDI QQLIRAAPST LTTPGEIIKY VLDRQKIAPL TDQGIAAAMS SAIQPLVMAV VNRERDGQTG SGGRARGLCY TCGSPGHYQA QCPKKRKSGN SRERCQLCDG MGHNAKQCRR RDGNQGQRPG KGLSSGSWPV SEQPAVSLAM TMEHKDRPLV RVILTNTGSH PVKQRSVYIT ALLDSGADIT IISEEDWPTD WPVMEAANPQ IHGIGGGIPM RKSRDMIEVG VINRDGSLER PLLLFPAVAM VRGSILGRDC LQGLGLRLTN L
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase.
Modifications2103..2103:ribosomal_frameshift
MEAVIKVISS ACKTYCGKIS PSKKEIGAML SLLQKEGLLM SPSDLYSPGS WDPITAALSQ RAMVLGKSGE LKTWGLVLGA LKAAREEQVT SEQAKFWLGL GGGRVSPPGP ECIEKPATER RIDKGEEVGE TTAQRDAKMA PEKMATPKTV GTSCYQCGTA TGCNCATASA PPPPYVGSGL YPSLAGVGEQ QGQGGDTPWG AEQPRAEPGH AGLAPGPALT DWARIREELA STGPPVVAMP VVIKTEGPAW TPLEPKLITR LADTVRTKGL RSPITMAEVE ALMSSPLLPH DVTNLMRVIL GPAPYALWMD AWGVQLQTVI AAATRDPRHP ANGQGRGERT NLDRLKGLAD GMVGNPQGQA ALLRPGELVA ITASALQAFR EVARLAEPAG PWADITQGPS ESFVDFANRL IKAVEGSDLP PSARAPVIID CFRQKSQPDI QQLIRAAPST LTTPGEIIKY VLDRQKIAPL TDQGIAAAMS SAIQPLVMAV VNRERDGQTG SGGRARGLCY TCGSPGHYQA QCPKKRKSGN SRERCQLCDG MGHNAKQCRR RDGNQGQRPG KGLSSGSWPV SEQPAVSLAM TMEHKDRPLV RVILTNTGSH PVKQRSVYIT ALLDSGADIT IISEEDWPTD WPVMEAANPQ IHGIGGGIPM RKSRDMIEVG VINRDGSLER PLLLFPAVAM VRGSILGRDC LQGLGLRLTN LIGRATVLTV ALHLAIPLKW KPDHTPVWID QWPLPEGKLV ALTQLVEKEL QLGHIEPSLS CWNTPVFVIR KASGSYRLLH DLRAVNAKLV PFGAVQQGAP VLSALPRGWP LMVLDLKDCF FSIPLAEQDR EAFAFTLPSV NNQAPARRFQ WKVLPQGMTC SPTICQLVVG QVLEPLRLKH PSLRMLHYMD DLLLAASSHD GLEAAGEEVI STLERAGFTI SPDKIQREPG VQYLGYKLGS TYVAPVGLVA EPRIATLWDV QKLVGSLQWL RPALGIPPRL MGPFYEQLRG SDPNEAREWN LDMKMAWREI VQLSTTAALE RWDPALPLEG AVARCEQGAI GVLGQGLSTH PRPCLWLFST QPTKAFTAWL EVLTLLITKL RASAVRTFGK EVDILLLPAC FREDLPLPEG ILLALRGFAG KIRSSDTPSI FDIARPLHVS LKVRVTDHPV PGPTAFTDAS SSTHKGVVVW REGPRWEIKE IADLGASVQQ LEARAVAMAL LLWPTTPTNV VTDSAFVAKM LLKMGQEGVP STAAAFILED ALSQRSAMAA VLHVRSHSEV PGFFTEGNDV ADSQATFQAY PLREAKDLHT ALHIGPRALS KACNISMQQA REVVQTCPHC NSAPALEAGV NPRGLGPLQI WQTDFTLEPR MAPRSWLAVT VDTASSAIVV TQHGRVTSVA AQHHWATAIA VLGRPKAIKT DNGSCFTSKS TREWLARWGI AHTTGIPGNS QGQAMVERAN RLLKDKIRVL AEGDGFMKRI PTSKQGELLA KAMYALNHFE RGENTKTPIQ KHWRPTVLTE GPPVKIRIET GEWEKGWNVL VWGRGYAAVK NRDTDKVIWV PSRKVKPDVT QKDEVTKKDE ASPLFAGISD WIPWEDEQEG LQGETASNKQ ERPGEDTLAA NES

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