Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200528"

Accession numberr200528 [export]
Locus namegag-pro
Recode1 namepro_m_vir_blv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismBovine leukemia virus [details]
AcronymBLV

Sequence

GenBank IDsNC_001414
SequenceRNA of 1719 nucleotides [sequence]
OrganisationPseudoknot structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,180)
Descriptionapprox. 12% frameshifting with reporter gene in S. cerevisiae. This is the CDS part of the sequence.
ModelsHMM
ATGGGAAATT CCCCCTCCTA TAACCCCCCC GCTGGTATCT CCCCCTCAGA CTGGCTCAAC CTTCGTCAAA GCGCGCAAAG GCTCAATCCG CGACCCTCTC CTAGCGATTT TACCGATTTA AAAAATTACA TCCATTGGTT TCATAAGACC CAGAAAAAAC CATGGACTTT CACTTCTGGT GGCCCCGCCT CATGCCCACC CGGGAAATTC GGTCGGGTTC CCCTCGTCTT GGCCACCCTA AACGAAGTAC TCTCAAACGA TGAGGGCGCC CCAGGTGCAT CAGCCCCAGA AGAACAACCC CCCCCTTATG ACCCCCCCGC CATTTTGCCA ATTATATCTG AAGGAAATCG CAACCGCCAT CGCGCTTGGG CACTCCGAGA ATTACAAGAT ATTAAAAAAG AAATTGAAAA TAAGGCACCG GGTTCGCAAG TATGGATACA AACACTACGA CTTGCAATCT TACAGGCCGA CCCTACTCCT GCTGACCTAG AACAACTTTG CCAATATATT GCTTCCCCGG TCGATCAAAC GGCCCACATG ACCAGCCTAA CGGCAGCAAT AGCCGCCGCT GAAGCGGCCA ATACCCTCCA GGGTTTTAAT CCCCAAAATG GGACCCTGAC CCAACAATCA GCTCAGCCCA ACGCCGGGGA CCTTAGAAGT CAATATCAAA ACCTTTGGCT TCAGGCCTGG AAAAATCTCC CTACTCGTCC TTCAGTACAA CCCTGGTCCA CCATCGTCCA AGGCCCCGCC GAGAGCTATG TAGAGTTTGT CAACCGGTTA CAAATTTCAT TAGCTGACAA CCTTCCCGAC GGAGTCCCTA AAGAACCCAT TATTGACTCC CTTAGCTATG CTAATGCTAA CAAAGAATGC CAACAAATTT TGCAAGGGCG GGGCCTAGTG GCCGCCCCGG TGGGACAAAA ACTGCAGGCT TGTGCACATT GGGCCCCCAA GGTTAAACAG CCTGCAATCC TCGTCCACAC CCCAGGGCCC AAGATGCCCG GGCCTCGGCA ACCGGCCCCC AAAAGGCCCC CCCCGGGACC ATGCTATCGA TGCCTCAAAG AAGGCCATTG GGCCCGGGAC TGTCCCACCA AGACCACCGG CCCCCCTCCG GGACCTTGTC CCATATGTAA AAGATCCTTC CCATTGGAAA CGAGACTGTC CAACCCTCAA ATCAAAAAAC TAATAGAGGG GGGACTTAGC GCCCCCCAAA CCGTAACCCC TATAACAGAT CCTCTTAGTG AGGCCGAATT AGAATGCCTA CTTTCTATTC CTCTGGCTCG CAGCCGTCCC TCCGTGGCTG TATACCTGTC TGGCCCCTGG CTGCAGCCCT CTCAGAATCA AGCCCTTATG CTCGTGGACA CCGGGGCTGA AAATACGGTC CTCCCACAAA ATTGGCTGGT TCGAGATTAC CCACGGATCC CCGCCGCGGT GCTCGGAGCA GGGGGAGTCT CCCGGAACAG ATACAATTGG CTACAAGGCC CTCTGACCCT GGCTCTAAAA CCAGAGGGTC CCTTTATCAC CATCCCAAAA ATTTTAGTTG ACACTTTCGA TAAATGGCAA ATTTTAGGAC GGGACGTCCT CTCCCGCCTA CAGGCCTCTA TCTCCATACC TGAGGAGGTA CGCCCCCCCA TGGTAGGCGT CCTAGATGCC CCCCCGAGCC ACATTGGATT AGAACATTTG CCCGTCCCAC CTGAGGTACC TCAATTCCCT TTAAACTAG

Products

Productgag
Descriptiongag polyprotein
MGNSPSYNPP AGISPSDWLN LRQSAQRLNP RPSPSDFTDL KNYIHWFHKT QKKPWTFTSG GPASCPPGKF GRVPLVLATL NEVLSNDEGA PGASAPEEQP PPYDPPAILP IISEGNRNRH RAWALRELQD IKKEIENKAP GSQVWIQTLR LAILQADPTP ADLEQLCQYI ASPVDQTAHM TSLTAAIAAA EAANTLQGFN PQNGTLTQQS AQPNAGDLRS QYQNLWLQAW KNLPTRPSVQ PWSTIVQGPA ESYVEFVNRL QISLADNLPD GVPKEPIIDS LSYANANKEC QQILQGRGLV AAPVGQKLQA CAHWAPKVKQ PAILVHTPGP KMPGPRQPAP KRPPPGPCYR CLKEGHWARD CPTKTTGPPP GPCPICKRSF PLETRLSNPQ IKKLIEGGLS APQTVTPITD PLSEAELECL LSIPLARSRP SVAVYLSGPW LQPSQNQALM LVDTGAENTV LPQNWLVRDY PRIPAAVLGA GGVSRNRYNW LQGPLTLALK PEGPFITIPK ILVDTFDKWQ ILGRDVLSRL QASISIPEEV RPPMVGVLDA PPSHIGLEHL PVPPEVPQFP LN
Productgag-pro
Descriptiongag capsid polyprotein, protease.
Modifications1180..1180:ribosomal_frameshift
MGNSPSYNPP AGISPSDWLN LRQSAQRLNP RPSPSDFTDL KNYIHWFHKT QKKPWTFTSG GPASCPPGKF GRVPLVLATL NEVLSNDEGA PGASAPEEQP PPYDPPAILP IISEGNRNRH RAWALRELQD IKKEIENKAP GSQVWIQTLR LAILQADPTP ADLEQLCQYI ASPVDQTAHM TSLTAAIAAA EAANTLQGFN PQNGTLTQQS AQPNAGDLRS QYQNLWLQAW KNLPTRPSVQ PWSTIVQGPA ESYVEFVNRL QISLADNLPD GVPKEPIIDS LSYANANKEC QQILQGRGLV AAPVGQKLQA CAHWAPKVKQ PAILVHTPGP KMPGPRQPAP KRPPPGPCYR CLKEGHWARD CPTKTTGPPP GPCPICKRSF PLETRLSNPQ IKKPNRGGT

Publications