Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200531"

Accession numberr200531 [export]
Locus nameP1-P2
Recode1 namepol_m_vir_bydv-mav
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismBarley yellow dwarf virus-MAV [details]

Sequence

GenBank IDsNC_003680
SequenceRNA of 2603 nucleotides [sequence]
OrganisationComplex structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,017)
Descriptionthe nucleotide sequence 4806?4899 of the 3' translation enhancer (3'TE) and the sequence 5020?5265 of the 3'-frameshift signal (3'FSS) are involved in translation control. This is the CDS part of the sequence.
ModelsHMM
ATGTTCTTCG AAATACTCAT AGGAGCTAGC ACTAAGGCGG TTAAAGACTT CATCAGTCAT TGTTACTCTC GTTTGAAATC TATATATTAT TGTTTCAAAC GATGGCTGAT GGAGATATCT GGGCAGTTTA AGGCCCATGA CGCCTTTGTC AACATGTGCT TCGGGCATAT GGCTGACATT GAGGACTTCG AGGCAGAGCT CGCTGAGGAG TTTGCCGAGA GGGAGGATGA GGTGGAAGAG GCAAGGAGCC TCTTGAAACT GCTGGTTGCC CAAAAATCTA AAACTGGGGT GACCGAGGCT TGGACCGACT TCTTTACGAA GTCGAGAGGT GGCGTCTACG CGCCACTTTC CTGTGAGCCT ACCAGGCAGG ACCTAGAAGT CAAGAGCGAG AAGCTCGAAA AACTTCTAGA AGAACAGCAC CAATTTGAGG TGCGAGCGGC CAAGAAATAC ATCAAGGAAA AGGGCCGCGG CTTCATCAAC TGTTGGAACG ACTTGAGAAG TCGTCTCAGG CTGGTGAAGG ACGTCAAGGA CGAGGCGAAG GACAATGCCA GAGCTGCTGC CAAAATCGGA GCAGAAATGT TCGCCCCCGT TGACGTGCAG GACCTCTACA GCTTTACAGA GGTCAAAAAG GTGGAGACCG GCCTCATGAA GGAGGTCGTA AAAGAGAGAA ACGGCGAAGA AGAGAAACAC CTCGAGCCCA TCATGGAAGA GGTGAGATCT ATCAAGGATA CCGCCGAAGC CAGGGATGCC GCCTCCACCT GGATTACAGA GACAATTAAG CTGAAGAACT CAACGCTTAA CGCAGATGAA TTGTCTCTAG CCACCATCGC CCGCTACGTT GAAAACGTAG GGGACAAATT CAAACTCGAC ATTGCTAGCA AGACATATTT AAAGCAAGTC GCATCGATGT CTGTGCCAAT TCCAACCAAC AAGGACATCA AATTGAAGAT GGTGCTGCAG AGTCCTGAAG CACGTGCCAG GCGGGAACGC ATGGACGTGC TTGACTCTGT GGGTTTTTAG AGGGGCTCTG TACCGCCTCT GGTTTTGAGA GCCCATTCCC CATTCTCGGG CTGCCAGAGA TTGCGGTCAC AGACGGAGCC CGACTCCGTA AGGTTAGTTG TAATATTAGA TACCTTAGCC AAACCCACCT AGGTCTTGTA TATAAGGCAC CAAATGCCTC CCTGCACAAT GCGCTTGTAG CAGTGGAGAG AAGAGTTTAC ACAGTAGGAA AGGGGGATAA GGCAATCTAC CCCCCCCGCC CAGAGCATGA CATTTTCACT GATACAATGG ATTACTTTCA GAAATCCATT ATAGAAGAGG TGGGATACTG TAAGACATAC CCAGCGCAAC TCCTGGCTAA CAGCTATAGC GCAGGAAAGC GGGCCATGTA TCACAAAGCT ATTGCATCAT TGAGAACTAT CCCTTACCAT CAGAAGGATG CCAATGTGCA AGCTTTCCTG AAGAAGGAAA AACACTGGAT GACCAAGGAC ATCGCCCCCC GATTGATTTG CCCCCGCAGC AAGCGGTACA ACATCATCCT AGGAACTCGT TTGAAATTCA ACGAGAAGAA GATCATGCAC GCTATCGATA GTGTGTTCGG ATCCCCCACT GTGCTTTCTG GCTATGACAA CTTTAAACAA GGAAGAATCA TAGCCAAGAA GTGGCAAAAG TTTGCATGCC CCGTCGCCAT CGGCGTGGAT GCTAGCCGCT TTGACCAACA CGTGTCAGAG CAGGCGCTTA AGTGGGAACA CGGGATATAT AATGGGGTCT TTGGAGACAG CGAACTGGCT CTTGCACTTG AACATCAAAT CACCAACAAC ATCAAGATGT TTGTTGAAGA TAAAATGCTT AGATTCAAGG TAAGAGGCCA CAGAATGTCC GGTGACATTA ACACCAGCAT GGGAAATAAG CTCATAATGT GCGGCATGAT GCATGCCTAT TTCAAGAAGC TGGGTGTTGA AGCTGAACTT TGTAACAACG GAGACGACTG TGTCATCATC ACTGATAGAG CCAATGAGAA GCTCTTTGAT GGCATGTACG ACCATTTCCT CCGGTATGGC TTCAACATGG TGACCGAAAA ACCAGTCTAC GAACTGGAGC AATTGGAGTT TTGCCAGTCA AAACCGGTCT CTATTAATGG AAAGTATAGA ATGGTCAGAA GGCCCGATAG CATAGGCAAA GATAGCACAA CACTACTGAG CATGCTCAAT CAATCCGACG TTAAAAGCTA CATGTCGGCC GTGGCTCAGT GCGGCTTGGT GCTCAACGCT GGGGTACCCA TACTTGAGAG CTTCTACAAA TGCCTATACA GAAGCTCTGG GTACAAGAAA GTGAGTGAGG AATTCATCAA AAACGTCATT TCGTATGGAA CGGATGAGAG ACTACAAGGT AGACGTACCT TCCAAGACAC ACCTATCACC AATCATAGTA GGATGTCCTA CTGGGAATCA TTCGGAGTTG ACCCTAAGAT ACAACAAATT GTCGAGCGGT ACTACGACAA TCTTACGGTA AGTGCCCAAC TCCAGAGTGT GAAGGTGACT ACTCCACATC TGCAATCAAT ACTACTTTCC ATACCGGAAA ACCACTCACA TAACGAATAT TAA

Products

ProductP1
DescriptionRNA-dependent RNA polymerase
MFFEILIGAS TKAVKDFISH CYSRLKSIYY CFKRWLMEIS GQFKAHDAFV NMCFGHMADI EDFEAELAEE FAEREDEVEE ARSLLKLLVA QKSKTGVTEA WTDFFTKSRG GVYAPLSCEP TRQDLEVKSE KLEKLLEEQH QFEVRAAKKY IKEKGRGFIN CWNDLRSRLR LVKDVKDEAK DNARAAAKIG AEMFAPVDVQ DLYSFTEVKK VETGLMKEVV KERNGEEEKH LEPIMEEVRS IKDTAEARDA ASTWITETIK LKNSTLNADE LSLATIARYV ENVGDKFKLD IASKTYLKQV ASMSVPIPTN KDIKLKMVLQ SPEARARRER MDVLDSVGF
ProductP1-P2
Descriptionputative protease and RNA-dependent RNA polymerase.
Modifications1017..1017:ribosomal_frameshift
MFFEILIGAS TKAVKDFISH CYSRLKSIYY CFKRWLMEIS GQFKAHDAFV NMCFGHMADI EDFEAELAEE FAEREDEVEE ARSLLKLLVA QKSKTGVTEA WTDFFTKSRG GVYAPLSCEP TRQDLEVKSE KLEKLLEEQH QFEVRAAKKY IKEKGRGFIN CWNDLRSRLR LVKDVKDEAK DNARAAAKIG AEMFAPVDVQ DLYSFTEVKK VETGLMKEVV KERNGEEEKH LEPIMEEVRS IKDTAEARDA ASTWITETIK LKNSTLNADE LSLATIARYV ENVGDKFKLD IASKTYLKQV ASMSVPIPTN KDIKLKMVLQ SPEARARRER MDVLDSVGFL EGLCTASGFE SPFPILGLPE IAVTDGARLR KVSCNIRYLS QTHLGLVYKA PNASLHNALV AVERRVYTVG KGDKAIYPPR PEHDIFTDTM DYFQKSIIEE VGYCKTYPAQ LLANSYSAGK RAMYHKAIAS LRTIPYHQKD ANVQAFLKKE KHWMTKDIAP RLICPRSKRY NIILGTRLKF NEKKIMHAID SVFGSPTVLS GYDNFKQGRI IAKKWQKFAC PVAIGVDASR FDQHVSEQAL KWEHGIYNGV FGDSELALAL EHQITNNIKM FVEDKMLRFK VRGHRMSGDI NTSMGNKLIM CGMMHAYFKK LGVEAELCNN GDDCVIITDR ANEKLFDGMY DHFLRYGFNM VTEKPVYELE QLEFCQSKPV SINGKYRMVR RPDSIGKDST TLLSMLNQSD VKSYMSAVAQ CGLVLNAGVP ILESFYKCLY RSSGYKKVSE EFIKNVISYG TDERLQGRRT FQDTPITNHS RMSYWESFGV DPKIQQIVER YYDNLTVSAQ LQSVKVTTPH LQSILLSIPE NHSHNEY

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