Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200532"

Accession numberr200532 [export]
Locus nameP1-P2
Recode1 namepol_m_vir_blrv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismBean leafroll virus [details]
AcronymBLRV

Sequence

GenBank IDsNC_003369
SequenceRNA of 2705 nucleotides [sequence]
OrganisationComplex structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,104)
Descriptionthe nucleotide sequence 5293?5388 of the 3' translation enhancer (3'TE) and the sequence 5400?5651 of the 3'-frameshift signal (3'FSS) are involved in translation control. This is the CDS part of the sequence.
ModelsHMM
ATGTTTAATT TTGATAGCTT GATCACCGCG TCTTCGCGGG TGGTCAAAGA TTTTATTCAT TTTTGTTACA ATAGGGCAAG GTCAGTATAC TGTGCCCTTA AACGCTGGCT GTGGGAGCTG CAGGGAAAAT TTGATGCACA TAATGCGTTT GTTGATCTCT GCTACGATGC CATGTATGGC ATTGAAAAAT TTGAGGAGGA GCTAGCCGAG GAATATACCC TGGCTGAATC TGAAGTCGCC CTAGCTGAGT GCCATTATAG GTACTTGGTT AGCAATGGTG CTCCCCTCAC CCACTGGCCG GTACCTTGCC CGCCTCCTGG TGCTCATCGT TCCATAGATG ACTATGAAGA TTCTGTGGAC GAGGCTGGGG CATTTGAGGA AGTGATTCCC TCTGTGCCTA AACCTGAACC TATCCCTTCT AAGGATGGGA AGAAGGACCA CTCTAAAAGT AATCCTTTTA GGGTTAAAGC TTTCATTAAC CTCGTGAAAG CAAAAGAGGT TCTACAGGCC ACTGAACAAA AAATTAAGGT GGTCTATGAG GAAGAGATTG GAGAGAGCCC CTTTGGAAGG TGGTTTAATA CTCTCCCGTC CCGCATGCAT TACATCAAGC GTGCGCTGAA GAAACGTGCT GTCAACGCAA AGAGAGCAAA GCACGTAACA AGCATGATGA AGGAAGTCAA CGTGATTCCT GACTTCGTCG CATGCTGTGA AGTCGTCCAG GTACCTACTG GCGAAATGAT ACCCCCAAAG AAAAATGAAC ATGGGGAAGA TGTTGGCGAA CCCACTCCCA AAACAAAAAT GGTGAGAAGG GTACTCCCCG AATGTGCAGC TGAAGCGCGT TCGTACATAA GGCAGCATAT CCGTAATAAC AACATGCGCC TTATTGACGG CACTGACGTG GCCCACGCTA CCATAAATAG GTATGCGTTA AAGTTCTGCG AGGAACTTGA TCTGGATCTA CCAAGCACAA CTATGCTGGT TGATTATGCC ATGACTATGG TCCCCCTTCC CCTCAAAAAT GACATTGAGA GGGCGAAGAT AGTTCACTCA CCTAATGCTA GACGCATTAG AGATGAGTTG GACTGTCTCA CCTCATCGGT TTTTTAGAGG GGCTCTGCTC CGACTCTGGT TTTGAATCCC CCTTTTCTAT TTTGGGATTA CCAGAGATCG TGGTGCGTAG CGGGGCTATC CCTAGGAAGA GTCGTAGTAA GATTAATTTT CTTAGTCAGT TTACCCTAGG CCTAGATTAC CAGTGTCCTA ATCCCAGCTT GCACAATGCA CTGGTCGCAG TTGAACGTCG AGTGTTCACT GTAGGAAAAG GAAATGAGGT GGTGCGTCCT TACTCTCCCC TTCAGGGTCA GTTTGAAAAG ATGAACTACT TTAGAGATGC TATTGTTAAG GATGTTGGAT GTCCAAAGAC ATACACACCA GAACAACTTG CTGCCACTTT CAAATCTGGG AAGAGGTCGC TGTACAACAC AGCGGTTCTC TCCTTGAAGA GGAAAGCTGT TGAGAAGCAA GATTCGTTTG TTACAGCATT TTTGAAGATG GAAAAACATA TGATGTGTAA GAAGATCGCA CCCAGACTTA TCTGCCCCCG AAATAAACGG TACAATGTTG AATTAGGGCG GCGGCTTAAA TTCTCTGAGA AGAAATTTAT GCACGCAATA GATAATGTCT TTAAATCCCC CACCGTTCTC AGCGGTTATG ATAGTTTCAA AGTGGGAAGG ATTATAGCCG ATAAATGGGG CAGGTTTAAG CGCCCCGTAG CCATTGGTGT TGATGCCAGT CGCTTTGACC AACATGTCAG CAAGCAGGCC CTAGAATGGG AACACTCTAT TTATAATGGG TGTTTTCGAG ACAAACAACT AGAGGAACTC TTGAAATGGC AAACAGAAAA CAAAGTTATG CTGTTTGTTG AAGATAAGAT ATTGAAGTTC AAAGTGTCTG GACACAGAAT GTCAGGAGAC ATCAACACAT CAATGGGCAA CAAATTGATC ATGTGCGGGA TGATGCACAA TTACTTCAGA GAGCTTGGTG TAGAAGCTGA GCTATGCAAC AATGGAGATG ATTGTGTCAT TATCTGTGAG CGAAAAAACG AGAAAAGATT CTCAGATATG CACAGATGGT TTAAGGAATA TGGCTTCGAT ATGCAGATAG AGAAACCCGT TTACAAACTA ACGGAGTTAG AATTTTGCCA ATCCAAACCG GTCAAGATCA ACGGCTTTTA CAGAATGGTG CGTAAACCAC AGTCTATTTC AAAGGACGCA CATTCTCTCA TTTCCATGGC ATCAGCTGAA GATGTCAAGA CCTTCATGAG TGCTACTGCT CAATGCGGGT TAATTTTAAA TAGTGGAGTA CCCGTGTTGG AAGCATTTCA TAATTGCCTA TACAAAGCTT CCGGGTACAA ACATGTTTCG CAGGAACTAA TCGACAAGGT AGTCTCCTTT GGCACGCAAG ACAAACTCGG GCTCAGGAAA GAGCGAGTTG AAGAGCCAGT AACTATGGAA AATAGGTTGA GTTACTGGGA GTCTTTTGGG GTTGACCCGC AAACTCAGGT CCTTGTTGAA CGATACTTCA ACAATTTGCA GGTTAGCATC GAGCCCCGTG GCGTAAAGAG ATTGACGCCT TTACTTGACG CGAAACTTTT AAACATAGAC ATCCCTGCTA GATGCTCTGT GTCCTTACCC ACTATTCTGC AGTAG

Products

ProductP1
DescriptionRNA-dependent RNA polymerase
MFNFDSLITA SSRVVKDFIH FCYNRARSVY CALKRWLWEL QGKFDAHNAF VDLCYDAMYG IEKFEEELAE EYTLAESEVA LAECHYRYLV SNGAPLTHWP VPCPPPGAHR SIDDYEDSVD EAGAFEEVIP SVPKPEPIPS KDGKKDHSKS NPFRVKAFIN LVKAKEVLQA TEQKIKVVYE EEIGESPFGR WFNTLPSRMH YIKRALKKRA VNAKRAKHVT SMMKEVNVIP DFVACCEVVQ VPTGEMIPPK KNEHGEDVGE PTPKTKMVRR VLPECAAEAR SYIRQHIRNN NMRLIDGTDV AHATINRYAL KFCEELDLDL PSTTMLVDYA MTMVPLPLKN DIERAKIVHS PNARRIRDEL DCLTSSVF
ProductP1-P2
Descriptionputative protease and RNA-dependent RNA polymerase.
Modifications1104..1104:ribosomal_frameshift
MFNFDSLITA SSRVVKDFIH FCYNRARSVY CALKRWLWEL QGKFDAHNAF VDLCYDAMYG IEKFEEELAE EYTLAESEVA LAECHYRYLV SNGAPLTHWP VPCPPPGAHR SIDDYEDSVD EAGAFEEVIP SVPKPEPIPS KDGKKDHSKS NPFRVKAFIN LVKAKEVLQA TEQKIKVVYE EEIGESPFGR WFNTLPSRMH YIKRALKKRA VNAKRAKHVT SMMKEVNVIP DFVACCEVVQ VPTGEMIPPK KNEHGEDVGE PTPKTKMVRR VLPECAAEAR SYIRQHIRNN NMRLIDGTDV AHATINRYAL KFCEELDLDL PSTTMLVDYA MTMVPLPLKN DIERAKIVHS PNARRIRDEL DCLTSSVFLE GLCSDSGFES PFSILGLPEI VVRSGAIPRK SRSKINFLSQ FTLGLDYQCP NPSLHNALVA VERRVFTVGK GNEVVRPYSP LQGQFEKMNY FRDAIVKDVG CPKTYTPEQL AATFKSGKRS LYNTAVLSLK RKAVEKQDSF VTAFLKMEKH MMCKKIAPRL ICPRNKRYNV ELGRRLKFSE KKFMHAIDNV FKSPTVLSGY DSFKVGRIIA DKWGRFKRPV AIGVDASRFD QHVSKQALEW EHSIYNGCFR DKQLEELLKW QTENKVMLFV EDKILKFKVS GHRMSGDINT SMGNKLIMCG MMHNYFRELG VEAELCNNGD DCVIICERKN EKRFSDMHRW FKEYGFDMQI EKPVYKLTEL EFCQSKPVKI NGFYRMVRKP QSISKDAHSL ISMASAEDVK TFMSATAQCG LILNSGVPVL EAFHNCLYKA SGYKHVSQEL IDKVVSFGTQ DKLGLRKERV EEPVTMENRL SYWESFGVDP QTQVLVERYF NNLQVSIEPR GVKRLTPLLD AKLLNIDIPA RCSVSLPTIL Q

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