Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200541"

Accession numberr200541 [export]
Locus namegag-pol
Recode1 namepol_m_vir_jdv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismBovine immunodeficiency virus [details]
AcronymBIV

Sequence

VariantJembrana disease virus
GenBank IDsNC_001654
SequenceRNA of 4298 nucleotides [sequence]
OrganisationComplex structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,215)
Descriptionthis is the CDS part of the sequence.
ModelsHMM
ATGAAGTTGA GCAAGCTTGA GAAGGCCCTT AAAAAGGTAA GGGTGACGCC CCAGAGAGAT GATACTTATA CAATAGGAAA CGTCCTGTGG GCCATCAGGA TGTGTAGATT GATGGGGCTG GATTGCTGCA TAGATGAGGC TACAGCAGCG GAGGTGGCAA TTTTGATAGG ACGTTTCCAG TCGTTGGATT TACAAGACTC CCCTTTAAAG GGAAAGGATG AGAAAGCCAT ATTGACCACT CTGAAAGTTT TGTGGAGCCT GCTGGCGGGC CACCACCCAG AAAATTCAGA TATGGCAGAA AAGTATTGGG AAGCATGGAC AATCAGAGAA AGGGAGTCCC AAAAGGAGGA GGAAGGAGAA ATTACCAGCA TCTACCCACA ACTTAGAAAG AACTTCCCCG CTGTATCCAC ATCTGACGGG TCTCCTAGAT ATGACCCTGA TTTAACAAAA CAGCTAAAGA TTTGGGCAGA TGCGACGGAA AAACATGGGG TGGACCACCA CGCCGTTAAT ATTTTAGGGG TGATCACAGC AAACTTAACA CAAAGTGAAA TTAGGCTATT ACTACAAAGC ACCCCACAAT GGAGATTGGA TATTCAGCTC ATAGAATCAA AATTAAATGC CAGGGAGCAC GCCCATAGGG TCTGGAAAGA GTCCCACCCG GAGGCCCCAA AGACAGATGA GATAATTGGA AAGGGGCTAA CCGCAGCAGA GCAAGCCACC TTAACCACCC AAGAATGCAG AGACACTTAT AGGCAGTGGG TTTTAGAGGC GGCGTTAGAG GTAGCACAAG GAAAACATGA CCGGCCCGGA CCTATTAATA TCCACCAGGG GCCGAAAGAG CCATATCCTG AGTTTGTAAA TAAGTTAGTT ACAGCATTGG AGGGTATGGC AGCACCCGAA ACTACCAAAC AGTATCTATT AGACCACCTG TCGGTGGATC ATGCAAATGA GGACTGCCGC GCAGTGTTGC TACCTTTAGG GCCCTCAGCC CCGATGGAGA GGAAGTTAGA GGCATGCAGG GCGGTAGGTT CAAGTAAACA GAAGATGCAA TTCTTGGCAG AGGCATTTGC AGCTATAAAC GTAAAGGGTG ATGGAGAAGT ACAAAGGTGT TATGGATGTG GGAAGCCTGG CCATATAAGA AGGGATTGCA AGAACCAGAA ATGTTTCAAA TGTGGAAAAC CGGGCCACTT ACAAAGGAAC TGCAAATCAA AAAACGGGAG GCGCTCCTCT GCCCCTTCTG GGCAGAGGAG CGGATACCAT CAGGAGAAGA CTTCTGTGAC CCCGTCTGCT CCCCCGTTGG TATTAGATTA AACAGGCAAC CTTTCATAAA AATTTTCTTA GGAGGGAGGT GGGTTAGGGC TTTGATAGAT ACAGGGGCAG ATGAGGTAGT GCTGAAAGAC ATTCATTGGG ATAGAATCAA GGGTGTGCCC GCTGCCTCAG TAGTGCAGGT TGGAGTAACA GGCAGAAATA TAGCAAGGAG GAAAAGTAAT GTAGAGTGGA GATTCAAAAA CAGATATGGC ATAGTGGACG TCCTGTTCTC CAACACTCCA GTAAATTTGC TAGGCCGATC AGTACTGCAA AGTATAGTGA CAAAATTTAC TCTAGCTGCA CACACCAAAC AGATTCAACC ACTTCCGGTC AAGCTACATG GGCCAGGTCC ACGGGTGCCT CAGTGGCCCC TCACATTAGA AAAATATAAA GCCCTTAAGG AAATTGTTGA GGAACTACTA AAAGATGGAA AAATCTCTAG AACCCCTTGG GATAATCCTT TCAATACCCC TGTTTTTGTA ATAAAAAAGA AAGGGGGAAG TAAGTGGAGA ATGCTAATGG ATTTCAGGGC CTTAAATAAA GTGACAAACA AAGGACAAGA ATTCCAAATC GGGCTGCCAT ACCCCCCAGG AATTCAGCAA TGTGAACATA TAACAGCTAT AGACATAAAA GATGCCTACT TTACCATCCC TTTAGATGAG AATTTTAGAC AATACACTGC TTTCTCGGTG GTCCCGGTGA ATAGAGAAGG GCCTCTAGAA AGATATCATT GGAATGTGTT ACCTCAAGGG TGGGTGTGTA GCCCTGCCAT ATATCAAACA ACCACTCAGG AGATAATTGC AGAGATAAAA GATAGATTTC CTGACATTGT GCTCTATCAA TATATGGATG ACCTTTTAAT TGGATCAGAC AGACCAGACC ATAAAAGGGT GGTGAGTGAA ATTAGGGAAG AATTAGGGGC TTATGGTTTT AAAACTCCAG AAGAAAAAAT CCAGGAAGAA CAGGTGCAAT GGTTGGGGTA TGAACTTACC CCGAAAAGGT GGCGGTTCCA GCCTAGGCAG ATAAAAATAA AAAAGGTGGT AACAGTGAAT GAGCTACAAC AGATGATAGG AAACTGTGTA TGGGTGCAGC CGGAGGTAAA AATCCCTTTG AGTCCCCTCT CAGATTTACT AAAAGGGAAA ACTGACCTAA AAGATAAGAT AAAATTGACT GAAGAGGCTA TCCAATGCCT AGAGACAGTA AATAAGAGAT TAAAAGACCC TGAATGGAAG GAAAGGATAA AGGAAGGAAC TGAGCTGGTA GTTAAAATTC AATTGATCCC TGAGGGCGTT GTTTATGATC TACTACAGGA TGGAAACCCC ATATGGGGTG GAGTGAAGGG ATGGGATTAT AATCACGCTA ATAAGATAAA GAAAATGTTA AGTATAATGA AAAAATTGTC CCGGATAGTC ATGATTATGA CCGGAAGGGA AGTCTCCTTC CTGATACCCG GAGATTCAGA AGACTGGGAA TCTGCCTTAC AGAGGATCAA TACACTAACA GAGATACCTG AAGTAAAATT CTACAAACAT GCCTGTAGGT GGACCTCTGT CTGCGGTCCT GTAATAGAAA GATATCCTAC TTATTATACT GATGGAGGCA AGAAAGGGTC TAAGGCAGCA GCAGCCTACT GGAGGGAGGG AAAAATAAGG AGGGAAGTTT TCCCAGGTAC AAATCAACAG GCAGAACTTA AGGCCGTCTT GATGGCTCTA CAAGATGGCC CTGCAAAAAT GAATATTATT ACAGACAGTA GATATGCTTT TGAGGGGATG CGAGAGGAAC CCGAGACTTG GGGAAGAGAA GGACTTTGGA AGGAAATCGG AGAAGAGCTA AGAAGGAAAG AGTATGTAGG AGTCAGTTGG GTTCCCGGAC ATAAGGGGAT CGGAGGAAAC ACAGAAGTAG ACCAAGAGGT ACAAAAAGCA CTCCAGGGCC CCATAACAGT GAGTCTCCCA CAAGAAATAC TATTAGAAGC AGGGGAGACA AAACTTGTGA AGACAGGGAT CTTCTGGGAA GGGCTGAGGC CATGTAAGCT CAGGCCCGAA GAAGGCCTGA AGCTTAAGGG AAGCTTAATA GATGAAGAAT TACAGCTGGA AATTACAAAT ACTCAAAACA GCAGGGTGGG AATAAGACAA GGGCAAACAA TTGGCACATG TTTCATTGAA GCTATTCCAC AAGCCATAGA AGAACATGAA AAATGGCATA CTACAGCGGA GATATTGGCT CGAGAGTTCC AACTACCCAG GAGAGTAGCT AGAGAAATTG TACACAGGTG TCAAGCATGT AAAAGAACAG TAAGTTGCCC CAGGAGGGGA ACAAACCCAA GAGAAAGATT CCTATGGCAA ATGGATAATA CCCATCTAGA AGGGAAAATT ATATGGGTAG CTGTGGAAAC AAATTCAGGG TTGATTGAGG CGCGGGTTAT TCCAGAAGAA AGCGCACAAT CAATAGTGTT TTGCATTTTA ATGCTCGTAT ACAGGTACAC CGTATACCAC ATACATAGTG ACAACGGGCC CTGTTTCATA GCACAAAAAG TAGAAGCCTT ATGTAAGTAT CTAAAGATTA CTAAAACAAC TGGTATACCT TACAACCCTC AAGCACAAGC TATAGTAGAA AGAACACACA GAGACATCAA AGATAAAATA GCAGCATTTA GGGAAGATTG TGAGACAGTA GAGGCGGCTT TGAGCCTGAC CCTAGTGGCC CTAAATAAAA AAAGAGGGGG AATAGGGGGT CATACCCCAT ATGAAATATA CCTAGAATCA GAATATAACA AATACCAAGA ACAACAGAAT CACTATAACA ATTTTAAAAC GGAAAAATGG GCCTATGTTA GGGACAAAAG GAAAGTATGG AAAGGACCAT ACAAAGTCCT ATGGGACGGA GAAGGGGCAG CAGTGGTAGA AGAAAACGCA ATGCCAACAT TATATCCCCA CCGGCATATG CGATTTATCC CGCCCCCCAA TACCGATACC CAAGATGGGA ATTTGTGA

Products

Productgag
Descriptiongag polyprotein
MKLSKLEKAL KKVRVTPQRD DTYTIGNVLW AIRMCRLMGL DCCIDEATAA EVAILIGRFQ SLDLQDSPLK GKDEKAILTT LKVLWSLLAG HHPENSDMAE KYWEAWTIRE RESQKEEEGE ITSIYPQLRK NFPAVSTSDG SPRYDPDLTK QLKIWADATE KHGVDHHAVN ILGVITANLT QSEIRLLLQS TPQWRLDIQL IESKLNAREH AHRVWKESHP EAPKTDEIIG KGLTAAEQAT LTTQECRDTY RQWVLEAALE VAQGKHDRPG PINIHQGPKE PYPEFVNKLV TALEGMAAPE TTKQYLLDHL SVDHANEDCR AVLLPLGPSA PMERKLEACR AVGSSKQKMQ FLAEAFAAIN VKGDGEVQRC YGCGKPGHIR RDCKNQKCFK CGKPGHLQRN CKSKNGRRSS APSGQRSGYH QEKTSVTPSA PPLVLD
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase.
Modifications1215..1215:ribosomal_frameshift
MKLSKLEKAL KKVRVTPQRD DTYTIGNVLW AIRMCRLMGL DCCIDEATAA EVAILIGRFQ SLDLQDSPLK GKDEKAILTT LKVLWSLLAG HHPENSDMAE KYWEAWTIRE RESQKEEEGE ITSIYPQLRK NFPAVSTSDG SPRYDPDLTK QLKIWADATE KHGVDHHAVN ILGVITANLT QSEIRLLLQS TPQWRLDIQL IESKLNAREH AHRVWKESHP EAPKTDEIIG KGLTAAEQAT LTTQECRDTY RQWVLEAALE VAQGKHDRPG PINIHQGPKE PYPEFVNKLV TALEGMAAPE TTKQYLLDHL SVDHANEDCR AVLLPLGPSA PMERKLEACR AVGSSKQKMQ FLAEAFAAIN VKGDGEVQRC YGCGKPGHIR RDCKNQKCFK CGKPGHLQRN CKSKNREALL CPFWAEERIP SGEDFCDPVC SPVGIRLNRQ PFIKIFLGGR WVRALIDTGA DEVVLKDIHW DRIKGVPAAS VVQVGVTGRN IARRKSNVEW RFKNRYGIVD VLFSNTPVNL LGRSVLQSIV TKFTLAAHTK QIQPLPVKLH GPGPRVPQWP LTLEKYKALK EIVEELLKDG KISRTPWDNP FNTPVFVIKK KGGSKWRMLM DFRALNKVTN KGQEFQIGLP YPPGIQQCEH ITAIDIKDAY FTIPLDENFR QYTAFSVVPV NREGPLERYH WNVLPQGWVC SPAIYQTTTQ EIIAEIKDRF PDIVLYQYMD DLLIGSDRPD HKRVVSEIRE ELGAYGFKTP EEKIQEEQVQ WLGYELTPKR WRFQPRQIKI KKVVTVNELQ QMIGNCVWVQ PEVKIPLSPL SDLLKGKTDL KDKIKLTEEA IQCLETVNKR LKDPEWKERI KEGTELVVKI QLIPEGVVYD LLQDGNPIWG GVKGWDYNHA NKIKKMLSIM KKLSRIVMIM TGREVSFLIP GDSEDWESAL QRINTLTEIP EVKFYKHACR WTSVCGPVIE RYPTYYTDGG KKGSKAAAAY WREGKIRREV FPGTNQQAEL KAVLMALQDG PAKMNIITDS RYAFEGMREE PETWGREGLW KEIGEELRRK EYVGVSWVPG HKGIGGNTEV DQEVQKALQG PITVSLPQEI LLEAGETKLV KTGIFWEGLR PCKLRPEEGL KLKGSLIDEE LQLEITNTQN SRVGIRQGQT IGTCFIEAIP QAIEEHEKWH TTAEILAREF QLPRRVAREI VHRCQACKRT VSCPRRGTNP RERFLWQMDN THLEGKIIWV AVETNSGLIE ARVIPEESAQ SIVFCILMLV YRYTVYHIHS DNGPCFIAQK VEALCKYLKI TKTTGIPYNP QAQAIVERTH RDIKDKIAAF REDCETVEAA LSLTLVALNK KRGGIGGHTP YEIYLESEYN KYQEQQNHYN NFKTEKWAYV RDKRKVWKGP YKVLWDGEGA AVVEENAMPT LYPHRHMRFI PPPNTDTQDG NL

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