Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200546"

Accession numberr200546 [export]
Locus namegag-pol
Recode1 namepol_m_vir_shiv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismSimian-Human immunodeficiency virus [details]
AcronymHIV

Sequence

GenBank IDsNC_001870
SequenceRNA of 4358 nucleotides [sequence]
OrganisationTrans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,305)
Descriptionpotentional secondary structure downstream of frameshifting site. This is the CDS part of the sequence.
ModelsHMM
ATGGGCGTGA GAAACTCCGT CTTGTCAGGG AAGAAAGCAG ATGAATTAGA AAAAATTAGG CTACGACCCA ACGGAAAGAA AAAGTACATG TTGAAGCATG TAGTATGGGC AGCAAATGAA TTAGATAGAT TTGGATTAGC AGAAAGCCTG TTGGAGAACA AAGAAGGATG TCAAAAAATA CTTTCGGTCT TAGCTCCATT AGTGCCAACA GGCTCAGAAA ATTTAAAAAG CCTTTATAAT ACTGTCTGCG TCATCTGGTG CATTCACGCA GAAGAGAAAG TGAAACACAC TGAGGAAGCA AAACAGATAG TGCAGAGACA CCTAGTGGTG GAAACAGGAA CAACAGAAAC TATGCCAAAA ACAAGTAGAC CAACAGCACC ATCTAGCGGC AGAGGAGGAA ATTACCCAGT ACAACAAATA GGTGGTAACT ATGTCCACCT GCCATTAAGC CCGAGAACAT TAAATGCCTG GGTAAAATTG ATAGAGGAAA AGAAATTTGG AGCAGAAGTA GTGCCAGGAT TTCAGGCACT GTCAGAAGGT TGCACCCCCT ATGACATTAA TCAGATGTTA AATTGTGTGG GAGACCATCA AGCGGCTATG CAGATTATCA GAGATATTAT AAACGAGGAG GCTGCAGATT GGGACTTGCA GCACCCACAA CCAGCTCCAC AACAAGGACA ACTTAGGGAG CCGTCAGGAT CAGATATTGC AGGAACAACT AGTTCAGTAG ATGAACAAAT CCAGTGGATG TACAGACAAC AGAACCCCAT ACCAGTAGGC AACATTTACA GGAGATGGAT CCAACTGGGG TTGCAAAAAT GTGTCAGAAT GTATAACCCA ACAAACATTC TAGATGTAAA ACAAGGGCCA AAAGAGCCAT TTCAGAGCTA TGTAGACAGG TTCTACAAAA GTTTAAGAGC AGAACAGACA GATGCAGCAG TAAAGAATTG GATGACTCAA ACACTGCTGA TTCAAAATGC TAACCCAGAT TGCAAGCTAG TGCTGAAGGG GCTGGGTGTG AATCCCACCC TAGAAGAAAT GCTGACGGCT TGTCAAGGAG TAGGGGGGCC GGGACAGAAG GCTAGATTAA TGGCAGAAGC CCTGAAAGAG GCCCTCGCAC CAGTGCCAAT CCCTTTTGCA GCAGCCCAAC AGAGGGGACC AAGAAAGCCA ATTAAGTGTT GGAATTGTGG GAAAGAGGGA CACTCTGCAA GGCAATGCAG AGCCCCAAGA AGACAGGGAT GCTGGAAATG TGGAAAAATG GACCATGTTA TGGCCAAATG CCCAGACAGA CAGGCGGGTT TTTTAGGCCT TGGTCCATGG GGAAAGAAGC CCCGCAATTT CCCCATGGCT CAAGTGCATC AGGGGCTGAT GCCAACTGCT CCCCCAGAGG ACCCAGCTGT GGATCTGCTA AAGAACTACA TGCAGTTGGG CAAGCAGCAG AGAGAAAAGC AGAGAGAAAG CAGAGAGAAG CCTTACAAGG AGGTGACAGA GGATTTGCTG CACCTCAATT CTCTCTTTGG AGGAGACCAG TAGTCACTGC TCATATTGAA GGACAGCCTG TAGAAGTATT ACTGGATACA GGGGCTGATG ATTCTATTGT AACAGGAATA GAGTTAGGTC CACATTATAC CCCAAAAATA GTAGGAGGAA TAGGAGGTTT TATTAATACT AAAGAATACA AAAATGTAGA AATAGAAGTT TTAGGCAAAA GGATTAAAGG GACAATCATG ACAGGGGACA CCCCGATTAA CATTTTTGGT AGAAATTTGC TAACAGCTCT GGGGATGTCT CTAAATTTTC CCATAGCTAA AGTAGAGCCT GTAAAAGTCG CCTTAAAGCC AGGAAAGGAT GGACCAAAAT TGAAGCAGTG GCCATTATCA AAAGAAAAGA TAGTTGCATT AAGAGAAATC TGTGAAAAGA TGGAAAAGGA TGGTCAGTTG GAGGAAGCTC CCCCGACCAA TCCATACAAC ACCCCCACAT TTGCTATAAA GAAAAAGGAT AAGAACAAAT GGAGAATGCT GATAGATTTT AGGGAACTAA ATAGGGTCAC TCAGGACTTT ACGGAAGTCC AATTAGGAAT ACCACACCCT GCAGGACTAG CAAAAAGGAA AAGAATTACA GTACTGGATA TAGGTGATGC ATATTTCTCC ATACCTCTAG ATGAAGAATT TAGGCAGTAC ACTGCCTTTA CTTTACCATC AGTAAATAAT GCAGAGCCAG GAAAACGATA CATTTATAAG GTTCTGCCTC AGGGATGGAA GGGGTCACCA GCCATCTTCC AATACACTAT GAGACATGTG CTAGAACCCT TCAGGAAGGC AAATCCAGAT GTGACCTTAG TCCAGTATAT GGATGACATC TTAATAGCTA GTGACAGGAC AGACCTGGAA CATGACAGGG TAGTTTTACA GTCAAAGGAA CTCTTGAATA GCATAGGGTT TTCTACCCCA GAAGAGAAAT TCCAAAAAGA TCCCCCATTT CAATGGATGG GGTACGAATT GTGGCCAACA AAATGGAAGT TGCAAAAGAT AGAGTTGCCA CAAAGAGAGA CCTGGACAGT GAATGATATA CAGAAGTTAG TAGGAGTATT AAATTGGGCA GCTCAAATTT ATCCAGGTAT AAAAACCAAA CATCTCTGTA GGTTAATTAG AGGAAAAATG ACTCTAACAG AGGAAGTTCA GTGGACTGAG ATGGCAGAAG CAGAATATGA GGAAAATAAA ATAATTCTCA GTCAGGAACA AGAAGGATGT TATTACCAAG AAGGCAAGCC ATTAGAAGCC ACGGTAATAA AGAGTCAGGA CAATCAGTGG TCTTATAAAA TTCACCAAGA AGACAAAATA CTGAAAGTAG GAAAATTTGC AAAGATAAAG AATACACATA CCAATGGAGT GAGACTATTA GCACATGTAA TACAGAAAAT AGGAAAGGAA GCAATAGTGA TCTGGGGACA GGTCCCAAAA TTCCACTTAC CAGTTGAGAA GGATGTATGG GAACAGTGGT GGACAGACTA TTGGCAGGTA ACCTGGATAC CGGAATGGGA TTTTATCTCA ACACCACCGC TAGTAAGATT AGTCTTCAAT CTAGTGAAGG ACCCTATAGA GGGAGAAGAA ACCTATTATA CAGATGGATC ATGTAATAAA CAGTCAAAAG AAGGGAAAGC AGGATATATC ACAGATAGGG GCAAAGACAA AGTAAAAGTG TTAGAACAGA CTACTAATCA ACAAGCAGAA TTGGAAGCAT TTCTCATGGC ATTGACAGAC TCAGGGCCAA AGGCAAATAT TATAGTAGAT TCACAATATG TTATGGGAAT AATAACAGGA TGCCCTACAG AATCAGAGAG CAGGCTAGTT AATCAAATAA TAGAAGAAAT GATTAAAAAG TCAGAAATTT ATGTAGCATG GGTACCAGCA CACAAAGGTA TAGGAGGAAA CCAAGAAATA GACCACCTAG TTAGTCAAGG GATTAGACAA GTTCTCTTCT TGGAAAAGAT AGAGCCAGCA CAAGAAGAAC ATGATAAATA CCATAGTAAT GTAAAAGAAT TGGTATTCAA ATTTGGATTA CCCAGAATAG TGGCCAGACA GATAGTAGAC ACCTGTGATA AATGTCATCA GAAAGGAGAG GCTATACATG GGCAGGCAAA TTCAGATCTA GGGACTTGGC AAATGGATTG TACCCATCTA GAGGGAAAAA TAATCATAGT TGCAGTACAT GTAGCTAGTG GATTCATAGA AGCAGAGGTA ATTCCACAAG AGACAGGAAG ACAGACAGCA CTATTTCTGT TAAAATTGGC AGGCAGATGG CCTATTACAC ATCTACACAC AGATAATGGT GCTAACTTTG CTTCGCAAGA AGTAAAGATG GTTGCATGGT GGGCAGGGAT AGAGCACACC TTTGGGGTAC CATACAATCC ACAGAGTCAG GGAGTAGTGG AAGCAATGAA TCACCACCTG AAAAATCAAA TAGATAGAAT CAGGGAACAA GCAAATTCAG TAGAAACCAT AGTATTAATG GCAGTTCATT GCATGAATTT TAAAAGAAGG GGAGGAATAG GGGATATGAC TCCAGCAGAA AGATTAATTA ACATGATCAC TACAGAACAA GAGATACAAT TTCAACAATC AAAAAACTCA AAATTTAAAA ATTTTCGGGT CTATTACAGA GAAGGCAGAG ATCAACTGTG GAAGGGACCC GGTGAGCTAT TGTGGAAAGG GGAAGGAGCA GTCATCTTAA AGGTAGGGAC AGACATTAAG GTAGTACCCA GAAGAAAGGC TAAAATTATC AAAGATTATG GAGGAGGAAA AGAGGTGGAT AGCAGTTCCC ACATGGAGGA TACCGGAGAG GCTAGAGAGG TGGCATAG

Products

Productgag
Descriptiongag polyprotein
MGVRNSVLSG KKADELEKIR LRPNGKKKYM LKHVVWAANE LDRFGLAESL LENKEGCQKI LSVLAPLVPT GSENLKSLYN TVCVIWCIHA EEKVKHTEEA KQIVQRHLVV ETGTTETMPK TSRPTAPSSG RGGNYPVQQI GGNYVHLPLS PRTLNAWVKL IEEKKFGAEV VPGFQALSEG CTPYDINQML NCVGDHQAAM QIIRDIINEE AADWDLQHPQ PAPQQGQLRE PSGSDIAGTT SSVDEQIQWM YRQQNPIPVG NIYRRWIQLG LQKCVRMYNP TNILDVKQGP KEPFQSYVDR FYKSLRAEQT DAAVKNWMTQ TLLIQNANPD CKLVLKGLGV NPTLEEMLTA CQGVGGPGQK ARLMAEALKE ALAPVPIPFA AAQQRGPRKP IKCWNCGKEG HSARQCRAPR RQGCWKCGKM DHVMAKCPDR QAGFLGLGPW GKKPRNFPMA QVHQGLMPTA PPEDPAVDLL KNYMQLGKQQ REKQRESREK PYKEVTEDLL HLNSLFGGDQ
Productgag-pol
Descriptiongag capsid polyprotein, RNA polymerase.
Modifications1305..1305:ribosomal_frameshift
MGVRNSVLSG KKADELEKIR LRPNGKKKYM LKHVVWAANE LDRFGLAESL LENKEGCQKI LSVLAPLVPT GSENLKSLYN TVCVIWCIHA EEKVKHTEEA KQIVQRHLVV ETGTTETMPK TSRPTAPSSG RGGNYPVQQI GGNYVHLPLS PRTLNAWVKL IEEKKFGAEV VPGFQALSEG CTPYDINQML NCVGDHQAAM QIIRDIINEE AADWDLQHPQ PAPQQGQLRE PSGSDIAGTT SSVDEQIQWM YRQQNPIPVG NIYRRWIQLG LQKCVRMYNP TNILDVKQGP KEPFQSYVDR FYKSLRAEQT DAAVKNWMTQ TLLIQNANPD CKLVLKGLGV NPTLEEMLTA CQGVGGPGQK ARLMAEALKE ALAPVPIPFA AAQQRGPRKP IKCWNCGKEG HSARQCRAPR RQGCWKCGKM DHVMAKCPDR QAGFLRPWSM GKEAPQFPHG SSASGADANC SPRGPSCGSA KELHAVGQAA ERKAERKQRE ALQGGDRGFA APQFSLWRRP VVTAHIEGQP VEVLLDTGAD DSIVTGIELG PHYTPKIVGG IGGFINTKEY KNVEIEVLGK RIKGTIMTGD TPINIFGRNL LTALGMSLNF PIAKVEPVKV ALKPGKDGPK LKQWPLSKEK IVALREICEK MEKDGQLEEA PPTNPYNTPT FAIKKKDKNK WRMLIDFREL NRVTQDFTEV QLGIPHPAGL AKRKRITVLD IGDAYFSIPL DEEFRQYTAF TLPSVNNAEP GKRYIYKVLP QGWKGSPAIF QYTMRHVLEP FRKANPDVTL VQYMDDILIA SDRTDLEHDR VVLQSKELLN SIGFSTPEEK FQKDPPFQWM GYELWPTKWK LQKIELPQRE TWTVNDIQKL VGVLNWAAQI YPGIKTKHLC RLIRGKMTLT EEVQWTEMAE AEYEENKIIL SQEQEGCYYQ EGKPLEATVI KSQDNQWSYK IHQEDKILKV GKFAKIKNTH TNGVRLLAHV IQKIGKEAIV IWGQVPKFHL PVEKDVWEQW WTDYWQVTWI PEWDFISTPP LVRLVFNLVK DPIEGEETYY TDGSCNKQSK EGKAGYITDR GKDKVKVLEQ TTNQQAELEA FLMALTDSGP KANIIVDSQY VMGIITGCPT ESESRLVNQI IEEMIKKSEI YVAWVPAHKG IGGNQEIDHL VSQGIRQVLF LEKIEPAQEE HDKYHSNVKE LVFKFGLPRI VARQIVDTCD KCHQKGEAIH GQANSDLGTW QMDCTHLEGK IIIVAVHVAS GFIEAEVIPQ ETGRQTALFL LKLAGRWPIT HLHTDNGANF ASQEVKMVAW WAGIEHTFGV PYNPQSQGVV EAMNHHLKNQ IDRIREQANS VETIVLMAVH CMNFKRRGGI GDMTPAERLI NMITTEQEIQ FQQSKNSKFK NFRVYYREGR DQLWKGPGEL LWKGEGAVIL KVGTDIKVVP RRKAKIIKDY GGGKEVDSSS HMEDTGEARE VA

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