Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200552"

Accession numberr200552 [export]
Locus nameorf1-orf2
Recode1 namepol_m_vir_bchv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismBeet chlorosis virus [details]

Sequence

GenBank IDsNC_002766
SequenceRNA of 3242 nucleotides [sequence]
OrganisationPseudoknot structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,425)
Descriptionapprox. 16% frameshifting with reporter gene in S. cerevisiae. This is the CDS part of the sequence.
ModelsHMM
ATGGACACCA AGTTGAACAG TTCTTACGCT CTATTCTTTT TCAGCTCCCT AATCTTATTT GGAGCTCTTG GGACCATGGC ACCATCTTAT ATGGTGACAG GCCCTTTACA CGCGCCGAAG ATCTCCTCAG ATTTTCCCTT ACCACCGGAT ATTACCCAAC TCCTACTAAC ACAGGACTCC GTGTGGGACT GCCCTCTTCA GAAAAAGCTG TCAGATTACA GCTACAAAGA ACTTGTAATA CACGTCTTGC AAAGAGGCTA CAACGACACC CAGAAATACT TGCCACAACT AGCATCAATG GATTTCGGAA AGCACTGGGA TACCATCTCA GGGCAATTAA CAGGATTGAA TATCCTGGAA AGATTGATGT GGGGCCTCAT ACGGTTATGG GGTTATGTAA TCTGGGTTGT CAGCTCATCC ACGATGAGCT TCTTGATGAA CAACTTGAGC CTGGCTATAA TAGTGGCCTC ATTGATGGCC TTAAGCGTGC TTATGGCACG GGCAGCTCAA TTATTCTTCA AAATATTACA ACTATGCCTA CCTGTGTTGG CGGCAAGGAT GGTGATGAGC GCGTTCACCA CGATGAAGAG AGTTTGCATA GAGAGACCTA AATCCTATGT AAAAGAGTGT GCAGTCCGGG GGTTCACTAC ATGGGCTGTA CCAATGAAAC CCCCAAAGAA TTCGATTTTG CTCATAAGTC ATGACGACGG TTCACACGCA GGTTATGCAA CTTGCGTGAC TTTACACGAC AGACAATCAA CCACCATTGG TTTGATAACC TGCTCGCATG CTCCCATCAA TGGGAGTGTT TTCTCAACCG TCACTGGCAA TAAGATCAAA ATGGAGAGTT TTAAAACTCT CTATGATGAC GCTGAAACAG ATGTAAAGAT CTTATTTGGC CCACCCAATT GGGAAAGCGT CATGGGATGC AAAGCCTTAA AACTTGTCAC TAGAGACAGC TTGGCGAAGG GGCCAGCCAC CATTTACACT TTTGGTGATA ATGGATGGAC TCTTTCACAA GCCTCGATTA GTGGCGCATA CGATAAAAAT AAAGCATCCG TACTGAGCAT AACCGATAAA GGGCATAGTG GAGCCCCGTA CATTAGTGGC AAAAACGTCA TAGGAATCCA CTCAGGAGGA GACGTCGTAG ACAATGTGAA TGTTTGTTCT ACGATTCCAA AGATTGTAAA TCTTACAACC CCTCAACTAG TCTTCGAGAC CACAGCCCCG CAAGGGAGAT TATTTCTCGA GAAAGAAATG GATGACCTGC TCGAATACGA TTGGTCAGGC CAAGAGGCTC GCGCCATTGT CAAAGAAAGA TTTGAGCGCG GGTTATATGA GGGCAAAGGA GTGAAGTCTT ACGACTTTGA AACTACCAGT GATAACGTCT CCTATCCTAT TGTCCCCCCA CATCTGCCGG GAAATGGACT GAGCGGCGCC GACCGCCAAA CAACCGGCAC CTTCGAAAGC ATCCAAAGTC AAATGCCCGC TTGTGGAGAT TCCTCAAGGC ACGATCTTGC TGCGACTCAG CCAAATTTCA TACCCACAAC GCAAGTGGCT GGAACACAGA TGACACCCGT CCAAGGTGTT TCTGTGATGA CCCAAGCCAT ACCGAGTGCA CCTTCGGTTC CAAACACCGA AGTGGAATTG ATGGGTCTCC TATTGAACCG AATAAATCTC GGGAATATAG AAGAGAAAGT GGCTGGACTG ATAGCGAAAA ACGTCGAGAA GCTATCAAGA CCCAGGCGAA GGATTTCGAA AAATTTTTCG AAGGTCAATA CCGGTGGGGC ATGGGTCCCA CCACACAGGA GGTCTGTGGA TTCGAAGAAG TCGGATCCCT CCCCAAGTTC TACCACTCTA AACAAAGGCT CAACTCAGAA TACGGGGTTA GAGTGGCGGA AGAGTACAGT GAGCTCAAAG AGCTCACAGC GGGATTTGGG TGGCCCAAGT TCGGCGCCCA AGCCGAATTA ACTTCCCTGC GACTGCAAGC TGACAGGTGG CTCCAACGGA TGGAGTCCGC ACAAATACCC TCGACAGAAG GCGAGGAATC CGTGATAAAC AGGCTAGTTG AAGCCTATAG TTGCGCGCGC ACTAACGCAC CAACATCAAC CGCCGGCAAT TCCCTAACGT GGGAAGGTTT TATTGAAGAC ATCAAGGAAG CTGTAAGCTC CTTAGAATTA GACGCCGGTG TTGGGGTTCC GTACATCGCC TACGGGACTC GTACCCACAG AGACTGGGTG TTCAACCAAG AGTTGCTACC TGTGTTGACT CGACTGACTT TCAACCGCCT ACAGAAGATG TTGGAAGTCA ACTCGGACGA CTTGAATGCG GAACAACTGG TTCAACACGG ACTTTGCGAC CCGATAAGGG TATTTGTTAA GGGAGAACCC CACAAAGTCT CCAAGCTGGA AGAAGGTCGC TACCGCCTTA TAATGAGTGT ATCCCTAGTG GATCAGTTGG TAGCCAGAGT TCTGTTCCAA AATCAGAACA AACGGGAAAT AGAACTCTGG AGGGCAGTGC CCTCGAAGCC GGGATTTGGT TTATCAACCG ATGACCAGAT CGAAGACTTT GTTAAAGTCT TGGCTTCACA ACTTGGTGAG GAACCACAAG AAGTTTTCAA TAACTGGTCC ACCAAGTTGA TACCAACAGA TTGCTCTGGT TTTGACTGGA GTGTAGCGGA CTGGATGCTC GAAGATGACA TGGAAGTCCG CAATCGCTTG ACCAGAAACA ACAACCACAC AACAAAACGA TTACGATCAG TGTGGTTAAA ATGCATAAGC AATTCAGTCT TATGCCTTTC TGATGGGTGC CTTCTTTCAC AGAGAGTGCC TGGAGTTCAG AAAAGTGGAA GTTACAATAC TTCTTCTTCA AACTCCCGTA TCAGAGTTAT GGCTGCATAT CATTGCGGCG CTTCCTGGGC TATGGCGATG GGCGATGACG CCCTAGAATC TGTTGACTCT AACCTAACAG AGTATAAAAA GTTGGGTTTC AAAGTCGAGG TAGCCAAACA ACTGGAATTT TGCTCACATA TCTTTAAGAA TGAGCGCCTC GCATTACCGC TGAATGTAAA GAAGATGCTT TACAAGCTAA TTTACGGGTA CAATCCTGAT AGCGGTAACT TGGAAGCGAT CAAGAATTAC CTTGACGCTT GCCACTCGAT CGTGAATGAA ATTCGTCACG ACGAGAGCTT GGTCCAGAAA ATAATATCGT GGTTGGTCAT TCCAGTCCAA CCACAAAACT AA

Products

Productorf1
DescriptionRNA-dependent RNA polymerase
MDTKLNSSYA LFFFSSLILF GALGTMAPSY MVTGPLHAPK ISSDFPLPPD ITQLLLTQDS VWDCPLQKKL SDYSYKELVI HVLQRGYNDT QKYLPQLASM DFGKHWDTIS GQLTGLNILE RLMWGLIRLW GYVIWVVSSS TMSFLMNNLS LAIIVASLMA LSVLMARAAQ LFFKILQLCL PVLAARMVMS AFTTMKRVCI ERPKSYVKEC AVRGFTTWAV PMKPPKNSIL LISHDDGSHA GYATCVTLHD RQSTTIGLIT CSHAPINGSV FSTVTGNKIK MESFKTLYDD AETDVKILFG PPNWESVMGC KALKLVTRDS LAKGPATIYT FGDNGWTLSQ ASISGAYDKN KASVLSITDK GHSGAPYISG KNVIGIHSGG DVVDNVNVCS TIPKIVNLTT PQLVFETTAP QGRLFLEKEM DDLLEYDWSG QEARAIVKER FERGLYEGKG VKSYDFETTS DNVSYPIVPP HLPGNGLSGA DRQTTGTFES IQSQMPACGD SSRHDLAATQ PNFIPTTQVA GTQMTPVQGV SVMTQAIPSA PSVPNTEVEL MGLLLNRINL GNIEEKVAGL IAKNVEKLSR PRRRISKNFS KVNTGGAWVP PHRRSVDSKK SDPSPSSTTL NKGSTQNTGL EWRKSTVSSK SSQRDLGGPS SAPKPN
Productorf1-orf2
Descriptionprotease and RNA-dependent RNA polymerase.
Modifications1425..1425:ribosomal_frameshift
MDTKLNSSYA LFFFSSLILF GALGTMAPSY MVTGPLHAPK ISSDFPLPPD ITQLLLTQDS VWDCPLQKKL SDYSYKELVI HVLQRGYNDT QKYLPQLASM DFGKHWDTIS GQLTGLNILE RLMWGLIRLW GYVIWVVSSS TMSFLMNNLS LAIIVASLMA LSVLMARAAQ LFFKILQLCL PVLAARMVMS AFTTMKRVCI ERPKSYVKEC AVRGFTTWAV PMKPPKNSIL LISHDDGSHA GYATCVTLHD RQSTTIGLIT CSHAPINGSV FSTVTGNKIK MESFKTLYDD AETDVKILFG PPNWESVMGC KALKLVTRDS LAKGPATIYT FGDNGWTLSQ ASISGAYDKN KASVLSITDK GHSGAPYISG KNVIGIHSGG DVVDNVNVCS TIPKIVNLTT PQLVFETTAP QGRLFLEKEM DDLLEYDWSG QEARAIVKER FERGLYEGKG VKSYDFETTS DNVSYPIVPP HLPGNWTERR RPPNNRHLRK HPKSNARLWR FLKARSCCDS AKFHTHNASG WNTDDTRPRC FCDDPSHTEC TFGSKHRSGI DGSPIEPNKS REYRRESGWT DSEKRREAIK TQAKDFEKFF EGQYRWGMGP TTQEVCGFEE VGSLPKFYHS KQRLNSEYGV RVAEEYSELK ELTAGFGWPK FGAQAELTSL RLQADRWLQR MESAQIPSTE GEESVINRLV EAYSCARTNA PTSTAGNSLT WEGFIEDIKE AVSSLELDAG VGVPYIAYGT RTHRDWVFNQ ELLPVLTRLT FNRLQKMLEV NSDDLNAEQL VQHGLCDPIR VFVKGEPHKV SKLEEGRYRL IMSVSLVDQL VARVLFQNQN KREIELWRAV PSKPGFGLST DDQIEDFVKV LASQLGEEPQ EVFNNWSTKL IPTDCSGFDW SVADWMLEDD MEVRNRLTRN NNHTTKRLRS VWLKCISNSV LCLSDGCLLS QRVPGVQKSG SYNTSSSNSR IRVMAAYHCG ASWAMAMGDD ALESVDSNLT EYKKLGFKVE VAKQLEFCSH IFKNERLALP LNVKKMLYKL IYGYNPDSGN LEAIKNYLDA CHSIVNEIRH DESLVQKIIS WLVIPVQPQN

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