Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200553"

Accession numberr200553 [export]
Locus nameorf2-orf3
Recode1 namepol_m_vir_tyv
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismTurnip yellows virus [details]

Sequence

GenBank IDsNC_003743
SequenceRNA of 3107 nucleotides [sequence]
OrganisationPseudoknot structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,386)
Descriptionthis is the CDS part of the sequence.
ModelsHMM
ATGTATTCAA AATTGATGTT TTTCTTCGCT CTTTGCTCTA TCAGCTTCCT TTTCACCTCG GAAGCTGCTT CCACGATGCT CCTCGAGAGC TCATACCTGC CACTGAACCA GAGTTATGCG CCTGGTTTTC TTTACAAACG GGATATGCTC CCGCCTCCAC TTCAGGCCGT GTTAACTTAC ACGTGCCCGG AACCAAGACC TCTCGCAGAA GAATCATACA ACGATCTTTT GCGAGCGATT TCTCAGAAAA GCTCAAGCGA TTTCCAGAAT GCTTATTCGT TAGCCTTGAG CTTTTCCAGC GACTTCTATC AACATGGACT AAAGACGTTG AAAGACGTAT CTTTTTTAGC TGTCGAGAAA TTCCTCTGGG GTCTGACACG CTTATGGAGC TCGCTAATCT TGGCGAGTTT CTCCGCGTTA TGGTGGTTGG TGAGCAATTT CACAACTCCC GTCTTCTGTC TCGCCTTGCT GTACACTGTT ACAAAATATA TGGTGAAGAC GGTTTCATTT CTTTTTGGAG GATTGCCAAT CTGGATCATT TCGATTGCTT TCTCACTCCT GAAGAAATCC TTTTCAGCTC TTCGGTCTAC ACCGAAATGT TTGTATGAAA AGGCCATAGA CGGTTTCAAG AGTTTCACTA TCCCGCAGAG TCCCCCAAAA TCTTGCGTGA TTCCCATCAC CCACGCAAGC GGAAACCACG CTGGCTATGC CAGTTGTATC AAGCTATATA ACGGAGAAAA TGCTCTAATG ACGGCAACTC ACGTCCTACG TGATTGCCCC AACGCCGTGG CTGTTTCCGC CAAAGGACTC AAAACGCGGA TTCCACTCGC AGAATTCAAA ACAATCGCGA AATCCGACAA AGGTGATGTT ACCCTCCTTC GCGGCCCCCC CAATTGGGAA GGACTGTTGG GCTGTAAAGC GGCCAACGTT ATAACAGCTG CTAACCTAGC GAAATGCAAA GCATCCATAT ACTCTTTTGA CAGAGATGGC TGGGTTAGCA GTTATGCCGA GATCGTAGGC TCAGAAGGTA CAGATGTTAT GGTTCTGAGC CATACGGAAG GAGGACACTC CGGAAGCCCC TACTTCAATG GTAAAACCAT CTTGGGGGTT CATTCAGGTG CCAGTGCTAC TGGAAATTAC AATTTAATGG CACCAATCCC ATCCCTCCCC GGACTTACTA GTCCGACTTA TGTGTTCGAA ACCACCGCAC CACAAGGAAG AGTTTTCGCA CAAGAAGATA TCGCTGAAAT CGAAGGCCTC TATGCACAAG TAATGAAAAG AGTTCAACAA GCGGAAGATT TCAAACCCAA AACTGGAAAG TATTGGGGTG ATATGGAGGA TGATGAAGAC ATTTTCTTCG AAAGCAAAGA AGATCTGTCG GGAAACGGAG TGCGCGGCAC CGTCCGCGGA ACAAACGGAG AAGGCAGCTC CACCCCAAAG ACAAGCAACG TCGATGGGAA AGAGATGATG GAGAAAATAA TCTCATCTCT AGTGGGAAAG ATAAATCTCG AGAACATCGA GAGGAAAGTG ATAGAGGAGA TCTCCGCGAA AGCGATGAAA ACTCCGAAAT CCCGCCGCAG AAGAGCCCCA AAGAAACAGC CGGAGAGTTC GAAAGATACT TCTCCTCGCT CTACAACTGG GAAGTACCAA CCTCCCCACG TGAGGTCCCC GGCTTCCGTC ACTGCGGCAA ACTGCCCCAA TACTACCACC CCAAGCAAAA AGAAGAATCT AGCTGGGGGA AGACCCTCGT CGGGAACCAT CCCGCGTTGG GTGAGAAAAC AAGCGGCTTC GGCTGGCCCA AGTTCGGCCC CGAAGCAGAA CTGAAGAGCC TGCGACTGCA GGCTTCACGG TGGCTGGAAC GCGCCCAGTC CGCAGAAATA CCCTCTGACG CTGAGAGGGA GCGTGTGATT CAAAAGACCG CAGATGTTTA CCATCCTTGC CAAACAAATG GGCCTGCGGC AACCCGAGGA GGAACACTAA CCTGGAACAA CTTCATGATT GATTTCAAAC AGGCAGTGTT CTCGCTGGAG TTCGATGCCG GAATCGAGCT CCCCTATATT GCCTATGGCA AGCCCACACA CCGTGGGTGG GTTGAAGACC AGAAACTCCT TCCAATCCTA GCTCAATTGA CCTTCTTCCG ACTACAGAAG ATGTTGGAGG TCAATTTCGA AGATATGGGA CCTGAGGAGC TGGTCCGGAA CGGTTTGTGT GATCCCATCC GATTATTCGT GAAGGGTGAG CCGCACAAGC AAGCGAAGCT CGATGAAGGC CGCTACCGCC TCATAATGAG CGTTTCCCTC GTGGATCAAC TGGTAGCCCG GGTTCTGTTT CAAAATCAGA ACAAGCGGGA AATTGCCCTG TGGAGGGCCA TCCCCAGCAA ACCCGGTTTT GGCTTGTCTA CGGATGAGCA AGTGCTGGAC TTTGTGGAAA GTCTGGCCCG TCAAGTAGGC ACCACTACGA CAGAGGTGGT TGCCAATTGG AAGAATTACT TGACGCCCAC GGATTGCTCC GGTTTTGACT GGAGTGTTGC GGATTGGATG CTTCACGACG ACATGATCGT CCGCAACAGA CTTACCATCG ACCTCAACCC CGCTACAGAA AGATTAAGAT CTTGCTGGTT GAGGTGCATT TCAAACTCAG TATTGTGCCT GAGTGATGGC ACCCTTTTAG CCCAAATTCA TCCGGGCGTT CAGAAGAGTG GGAGCTATAA TACATCAAGC TCCAACTCCC GGATCCGAGT TATGGCCGCC TTCCACACAG GTGCCATCTG GGCTATGGCG ATGGGTGATG ATGCCCTCGA GTCCAATCCC GCTGACCTAG CAGCGTACAA GAAACTAGGT TTCAAGGTTG AGGTTTCCGG ACAACTGGAA TTCTGCTCTC ATATCTTTAG AGCGCCGGAC CTCGCCCTCC CTGTGAACGA AAATAAGATG ATCTACAAAC TGATCTATGG CTATAATCCA GGGAGCGGAA ACGCTGAGGT AGTTTCAAAC TACTTGGCCG CTTGTTTCTC AGTTCTGAAC GAGTTGCGGC ATGATCCAGC GTCCGTTGAA CTTCTTTACT CGTGGTTAGT CGATCCGGTG CTACCACAAA AGATACCAGG AGAGTAA

Products

Productorf2
DescriptionRNA-dependent RNA polymerase
MYSKLMFFFA LCSISFLFTS EAASTMLLES SYLPLNQSYA PGFLYKRDML PPPLQAVLTY TCPEPRPLAE ESYNDLLRAI SQKSSSDFQN AYSLALSFSS DFYQHGLKTL KDVSFLAVEK FLWGLTRLWS SLILASFSAL WWLVSNFTTP VFCLALLYTV TKYMVKTVSF LFGGLPIWII SIAFSLLKKS FSALRSTPKC LYEKAIDGFK SFTIPQSPPK SCVIPITHAS GNHAGYASCI KLYNGENALM TATHVLRDCP NAVAVSAKGL KTRIPLAEFK TIAKSDKGDV TLLRGPPNWE GLLGCKAANV ITAANLAKCK ASIYSFDRDG WVSSYAEIVG SEGTDVMVLS HTEGGHSGSP YFNGKTILGV HSGASATGNY NLMAPIPSLP GLTSPTYVFE TTAPQGRVFA QEDIAEIEGL YAQVMKRVQQ AEDFKPKTGK YWGDMEDDED IFFESKEDLS GNGVRGTVRG TNGEGSSTPK TSNVDGKEMM EKIISSLVGK INLENIERKV IEEISAKAMK TPKSRRRRAP KKQPESSKDT SPRSTTGKYQ PPHVRSPASV TAANCPNTTT PSKKKNLAGG RPSSGTIPRW VRKQAASAGP SSAPKQN
Productorf2-orf3
Descriptionputative protease and RNA-dependent RNA polymerase.
Modifications1386..1386:ribosomal_frameshift
MYSKLMFFFA LCSISFLFTS EAASTMLLES SYLPLNQSYA PGFLYKRDML PPPLQAVLTY TCPEPRPLAE ESYNDLLRAI SQKSSSDFQN AYSLALSFSS DFYQHGLKTL KDVSFLAVEK FLWGLTRLWS SLILASFSAL WWLVSNFTTP VFCLALLYTV TKYMVKTVSF LFGGLPIWII SIAFSLLKKS FSALRSTPKC LYEKAIDGFK SFTIPQSPPK SCVIPITHAS GNHAGYASCI KLYNGENALM TATHVLRDCP NAVAVSAKGL KTRIPLAEFK TIAKSDKGDV TLLRGPPNWE GLLGCKAANV ITAANLAKCK ASIYSFDRDG WVSSYAEIVG SEGTDVMVLS HTEGGHSGSP YFNGKTILGV HSGASATGNY NLMAPIPSLP GLTSPTYVFE TTAPQGRVFA QEDIAEIEGL YAQVMKRVQQ AEDFKPKTGK YWGDMEDDED IFFESKEDLS GNRSARHRPR NKRRRQLHPK DKQRRWERDD GENNLISSGK DKSREHREES DRGDLRESDE NSEIPPQKSP KETAGEFERY FSSLYNWEVP TSPREVPGFR HCGKLPQYYH PKQKEESSWG KTLVGNHPAL GEKTSGFGWP KFGPEAELKS LRLQASRWLE RAQSAEIPSD AERERVIQKT ADVYHPCQTN GPAATRGGTL TWNNFMIDFK QAVFSLEFDA GIELPYIAYG KPTHRGWVED QKLLPILAQL TFFRLQKMLE VNFEDMGPEE LVRNGLCDPI RLFVKGEPHK QAKLDEGRYR LIMSVSLVDQ LVARVLFQNQ NKREIALWRA IPSKPGFGLS TDEQVLDFVE SLARQVGTTT TEVVANWKNY LTPTDCSGFD WSVADWMLHD DMIVRNRLTI DLNPATERLR SCWLRCISNS VLCLSDGTLL AQIHPGVQKS GSYNTSSSNS RIRVMAAFHT GAIWAMAMGD DALESNPADL AAYKKLGFKV EVSGQLEFCS HIFRAPDLAL PVNENKMIYK LIYGYNPGSG NAEVVSNYLA ACFSVLNELR HDPASVELLY SWLVDPVLPQ KIPGE

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