Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200554"

Accession numberr200554 [export]
Locus nameorf2-orf3
Recode1 namepol_m_vir_bmyv
Descriptionviral or mobile polyprotein
Recode statusReviewed

Organism

Genomic classViral Genome (Virus)
OrganismBeet mild yellowing virus [details]
AcronymBMYV

Sequence

GenBank IDsNC_003491
SequenceRNA of 4703 nucleotides [sequence]
OrganisationTrans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 2,895)
Descriptionpotentional secondary structure downstream of frameshifting site. This is the CDS part of the sequence.
ModelsHMM
ATGGACACCA AGTTGAACAG TTCTTACGCT CTATTCTTTT TCAGCTCCCT AATCTTATTT GGAGCTCTTG GGACCATGGC ACCATCTTAT ATGGTGACAG GCCCTTTACA CGCGCCGAAG ATCTCCTCAG ATTTTCCCTT ACCACCGGAT ATTACCCAAC TCCTACTAAC ACAGGACTCC GTGTGGGACT GCCCTCTTCA GAAAAAGCTG TCAGATTACA GCTACAAAGA ACTTGTAATA CACGTCTTGC AAAGAGGCTA CAACGACACC CAGAAATACT TGCCACAACT AGCATCAATG GATTTCGGAA AGCACTGGGA TACCATCTCA GGGCAATTAA CAGGATTGAA TATCCTGGAA AGATTGATGT GGGGCCTCAT ACGGTTATGG GGTTATGTAA TCTGGGTTGT CAGCTCATCC ACGATGAGCT TCTTGATGAA CAACTTGAGC CTGGCTATAA TAGTGGCCTC ATTGATGGCC TTAAGCGTGC TTATGGCACG GGCAGCTCAA TTATTCTTCA AAATATTACA ACTATGCCTA CCTGTGTTGG CGGCAAGGAT GGTGATGAGC GCGTTCACCA CGATGAAGAG AGTTTGCATA GAGAGACCTA AATCCTATGT AAAAGAGTGT GCAGTCCGGG GGTTCACTAC ATGGGCTGTA CCAATGAAAC CCCCAAAGAA TTCGATTTTG CTCATAAGTC ATGACGACGG TTCACACGCA GGTTATGCAA CTTGCGTGAC TTTACACGAC AGACAATCAA CCACCATTGG TTTGATAACC TGCTCGCATG CTCCCATCAA TGGGAGTGTT TTCTCAACCG TCACTGGCAA TAAGATCAAA ATGGAGAGTT TTAAAACTCT CTATGATGAC GCTGAAACAG ATGTAAAGAT CTTATTTGGC CCACCCAATT GGGAAAGCGT CATGGGATGC AAAGCCTTAA AACTTGTCAC TAGAGACAGC TTGGCGAAGG GGCCAGCCAC CATTTACACT TTTGGTGATA ATGGATGGAC TCTTTCACAA GCCTCGATTA GTGGCGCATA CGATAAAAAT AAAGCATCCG TACTGAGCAT AACCGATAAA GGGCATAGTG GAGCCCCGTA CATTAGTGGC AAAAACGTCA TAGGAATCCA CTCAGGAGGA GACGTCGTAG ACAATGTGAA TGTTTGTTCT ACGATTCCAA AGATTGTAAA TCTTACAACC CCTCAACTAG TCTTCGAGAC CACAGCCCCG CAAGGGAGAT TATTTCTCGA GAAAGAAATG GATGACCTGC TCGAATACGA TTGGTCAGGC CAAGAGGCTC GCGCCATTGT CAAAGAAAGA TTTGAGCGCG GGTTATATGA GGGCAAAGGA GTGAAGTCTT ACGACTTTGA AACTACCAGT GATAACGTCT CCTATCCTAT TGTCCCCCCA CATCTGCCGG GAAATGGACT GAGCGGCGCC GACCGCCAAA CAACCGGCAT GAAAACTGTA TTCGTTCTCT TCTCGCTGCT CTGCCTTTGC TGCTCAGTAA GCAGCTCGAC CCCGGGAGCT TCATTTACAC TCCCGGGAAA CGCCAGTCTT TACGACTGGC CAGGTTCTAC AATTACTGCG GAGCCGTGTT ACCCAGCACT CGCAACATTG ACTTACGAGT GCCCCCCAGA AAAGACGTTA AAAGATTTTA CCTTGCCCGA AATTCAGGCA GAGATCTGGG GGAGAGGCTA CAACGCCGCA GAGAAATTTT CTCTCGCGGT GAAGCAGAGT TTAAAAAGTT CCTTTCAGTA TGGTGTGCTG AAAGCGAGAG AAAGCTACGG GAGAGTCCTA AAATCGATAT TAGAATGGAC CATATTATTA TGGTCTTACG CGATATGGGC ACTCTCTTGC ACCGTCTGGT ACTTGTTGAA GAACTATACC ATAGAAATAC TTATGCTGAG CTCGCTTTTT GCGTTCACCA CCTTTTTGGT GAAGCTCGTG GTATGGATTT TTGGCGGTTG GCTAACTTCC CTGGTAAATG GTTTATTTGC TCTCACGAAA TGTATTTTGA AAACTCTTTC ATCCAGAAAG AGCTACGTTT GTGAGCGATC TGTAAAAGGT TTTCTCACCT TTACCATCAA ACAAAGCCCG CCGCGTAATT GCATTCTTCA AATACAACAC GCAGACGGTT CCCATGCCGG TTATGCAACA TGCGTAACCT TATTCGACGG GACAAACGGA TTGTTGACTG CGCAACATGT AGTTGACGAT TTTTACGAAG GAGACCCGAG AAAGACTCTA AAAGTCGTCT CCACCCGCAA TGGAAACAAA ATCCCCCTTG ATGAATTCAG AGTGACGTAC ACATCTGAGA AAAGGGATCA GTTGTTGATG CATGGGCCCC CAAACTGGGA AGGAGTTCTT GCCTGCAAGG CAGTTCACAT GATTCCGGCA TCGAGTGTTG CAAAATCGAA AGCAACTTTC TTTGCTCTGT CGGATGGTGA ATGGCATTCC TCTAATGCCG AGCTCGTTGG CACATCCAAG TGCGGAAAAT TCATTTCTGT ACTCAGTGAC ACAAAGAGTG GTCATTCGGG CACTCCCTAT TTCAATGGTA AGAGTGTTCT TGGAGTTCAC ATAGGCTCTC CGAAAGAATT TGAGTCGGAA AATGTTAACT ACATGTCTCC TATACCACGT TTTCCTGGAT TAACCAGCCC GAACTACATA TTTGAAACCA CAGCCCTTGC TGGAAAATTT TTCAGCCAAG AGGAAGTCGA AGAGCTAATG GAAGACTTCT CTCTCCAAGA GATTTATTCT ATAGCGACGG CACGTGGGAA GTACATAAAA TATGAGGCTT GTCCAGGTGA AGAGACATTC CATGATGTGC TAACAGAGTC CTCCCCGATG CAGGGGGAAG GAAGGGCGGC TCCGACCGCC GGAACAACCG GAAACGCAAG CACCCACGAG AGATCCGCAG GAAATGGAAA AAGCCCTCGT GCTGCTCCTT CTACACCGCG GGAACCCTTG GTGAAAACTG CACCGCAAGC CACGTACATT GTACCTCAAA AGAGGAATAT GACGAATGGC CGAGATGCTG GTGCCAAATT GCAGGCCACG ACTGCCACTA CCGATCAAAT CTCAGAGATA AAGAAGGCTC TGATAGACAA AATGGATTTG AAATCGATCG AGAGACAAGT GGTAGAGACA CTATCGTCGA TGGCCATGAA GAAGCCCCGC TCAAGAGGGC GGAGAAGATC CAAGAACAAG CAAAACAATT TGGACGCTTC TTCAAAACCC AGTACCACTG GGAAAGAGCC GCAGAGGTCT GCCCCGGTTT CATCAAAGTC GGTGAGCTCC CCAAGTTTTA CTTCTCTAAA CAAAAAGGAT GCTCGGATTG GGGCACGAAG CTCACCAGCC TCCACCCAGA ATTGGAGGAG AAAACCCGAG GCTTCGGGTG GCCCAAGTTC GGGCCAGCGG CGGAACTGAA ATCCTTGCGG CTACAAGCCG CAAGATGGCT CGAACGCGCC GAGCAAGTTA AAATCCCTTC AACTGAGGAA AGGGAGCGCG TCGTGAGGAA ATGTGTGGAA GCATTCTCGC CCACTCAAAC ACGAGGTCCC ATGGCCACGA GAGGAAACAA ACTGTCTTGG AACAATTTCC TTGAAGATTT TAAAACGGCA GTTTTCTCTC TCGAGCTCGA AGCCGGCGTA GGCGTCCCGT ATGTTGCTTA CGGTCGACGC ACGCACAGAG GCTGGATTGA AGATCCAGAT CTGTTGCCGG TTTTAGCTCG TTTCACCTTC GATCGATTAC AGAAGTTATC GGAGGTGAAA TTTGAGCATA TGAGCCCTGA ACAATTGGTT CAGGAAGGTC TGTGTGACCC AATACGGTTA TTCGTAAAAG GCGAGCCACA CAAACAATCC AAACTTGATG AAGGACGCTA CCGCCTCATC ATGAGTGTCT CATTGGTTGA TCAACTGGTA GCCCGGGTTC TGTTTCAAAA TCAGAACAAG CGCGAGATCG CGCTTTGGAG GGCGATTCCC TCAAAACCCG GATTCGGATT GTCCACAGAC GGACAAGTCG TCGATTTCAT GCAAGCATTA TCGGCGCAGG TGGGAGTGAA CACTGCTGAA TTACTCCAAA ATTGGAAATC CCACCTTATT CCTACAGATT GCTCTGGTTT TGACTGGAGC GTTTCGGACT GGCTTCTAGA GGATGAAATG GAAGTCCGGA ACAGGCTCAC GTTGGACATA AATGATCTAA CCAGGCGTCT GCGAGCTGGA TGGCTTAAAT GCCTCGCAAA TAGTGTTCTC TGTCTATCAG ATGGAACATT GCTCTCGCAG CAAGTGCCTG GTGTACAAAA GAGTGGCAGC TACAACACCT CCTCGTCTAA CTCTAGAATT CGAGTGATGG CCGCTTACCA CTCCGGAGCC TCCTGGGCCA TCGCCATGGG TGATGATGCC CTTGAATCTG TAGATGCAGA CCTAAGTCGA TACTCATCCT TAGGCTTCAA AGTCGAGGTT TCTTCACAAC TGGAATTCTG CTCTCACATT TTTGAGGAGG AGAACCTCGC CGTTCCGGTA AACAAAGCTA AAATGCTTTA TAAATTGATA CATGGTTATG AACCGGAATG TGGCAACCTT GAAGTTCTGA CGAACTATCT TGCAGCTTGT TTCTCAATTT TAAACGAGCT GAGATCCGAT CAAGAACTCG TTGCCTCCCT CTATCAGTGG CTGGTCCTTC CAGTGCAGCC ACAAAAGATA TAA

Products

Productorf2
DescriptionRNA-dependent RNA polymerase
MDTKLNSSYA LFFFSSLILF GALGTMAPSY MVTGPLHAPK ISSDFPLPPD ITQLLLTQDS VWDCPLQKKL SDYSYKELVI HVLQRGYNDT QKYLPQLASM DFGKHWDTIS GQLTGLNILE RLMWGLIRLW GYVIWVVSSS TMSFLMNNLS LAIIVASLMA LSVLMARAAQ LFFKILQLCL PVLAARMVMS AFTTMKRVCI ERPKSYVKEC AVRGFTTWAV PMKPPKNSIL LISHDDGSHA GYATCVTLHD RQSTTIGLIT CSHAPINGSV FSTVTGNKIK MESFKTLYDD AETDVKILFG PPNWESVMGC KALKLVTRDS LAKGPATIYT FGDNGWTLSQ ASISGAYDKN KASVLSITDK GHSGAPYISG KNVIGIHSGG DVVDNVNVCS TIPKIVNLTT PQLVFETTAP QGRLFLEKEM DDLLEYDWSG QEARAIVKER FERGLYEGKG VKSYDFETTS DNVSYPIVPP HLPGNGLSGA DRQTTGMKTV FVLFSLLCLC CSVSSSTPGA SFTLPGNASL YDWPGSTITA EPCYPALATL TYECPPEKTL KDFTLPEIQA EIWGRGYNAA EKFSLAVKQS LKSSFQYGVL KARESYGRVL KSILEWTILL WSYAIWALSC TVWYLLKNYT IEILMLSSLF AFTTFLVKLV VWIFGGWLTS LVNGLFALTK CILKTLSSRK SYVCERSVKG FLTFTIKQSP PRNCILQIQH ADGSHAGYAT CVTLFDGTNG LLTAQHVVDD FYEGDPRKTL KVVSTRNGNK IPLDEFRVTY TSEKRDQLLM HGPPNWEGVL ACKAVHMIPA SSVAKSKATF FALSDGEWHS SNAELVGTSK CGKFISVLSD TKSGHSGTPY FNGKSVLGVH IGSPKEFESE NVNYMSPIPR FPGLTSPNYI FETTALAGKF FSQEEVEELM EDFSLQEIYS IATARGKYIK YEACPGEETF HDVLTESSPM QGEGRAAPTA GTTGNASTHE RSAGNGKSPR AAPSTPREPL VKTAPQATYI VPQKRNMTNG RDAGAKLQAT TATTDQISEI KKALIDKMDL KSIERQVVET LSSMAMKKPR SRGRRRSKNK QNNLDASSKP STTGKEPQRS APVSSKSVSS PSFTSLNKKD ARIGARSSPA STQNWRRKPE ASGGPSSGQR RN
Productorf2-orf3
Descriptionputative protease and RNA-dependent RNA polymerase.
Modifications2895..2895:ribosomal_frameshift
MDTKLNSSYA LFFFSSLILF GALGTMAPSY MVTGPLHAPK ISSDFPLPPD ITQLLLTQDS VWDCPLQKKL SDYSYKELVI HVLQRGYNDT QKYLPQLASM DFGKHWDTIS GQLTGLNILE RLMWGLIRLW GYVIWVVSSS TMSFLMNNLS LAIIVASLMA LSVLMARAAQ LFFKILQLCL PVLAARMVMS AFTTMKRVCI ERPKSYVKEC AVRGFTTWAV PMKPPKNSIL LISHDDGSHA GYATCVTLHD RQSTTIGLIT CSHAPINGSV FSTVTGNKIK MESFKTLYDD AETDVKILFG PPNWESVMGC KALKLVTRDS LAKGPATIYT FGDNGWTLSQ ASISGAYDKN KASVLSITDK GHSGAPYISG KNVIGIHSGG DVVDNVNVCS TIPKIVNLTT PQLVFETTAP QGRLFLEKEM DDLLEYDWSG QEARAIVKER FERGLYEGKG VKSYDFETTS DNVSYPIVPP HLPGNGLSGA DRQTTGMKTV FVLFSLLCLC CSVSSSTPGA SFTLPGNASL YDWPGSTITA EPCYPALATL TYECPPEKTL KDFTLPEIQA EIWGRGYNAA EKFSLAVKQS LKSSFQYGVL KARESYGRVL KSILEWTILL WSYAIWALSC TVWYLLKNYT IEILMLSSLF AFTTFLVKLV VWIFGGWLTS LVNGLFALTK CILKTLSSRK SYVCERSVKG FLTFTIKQSP PRNCILQIQH ADGSHAGYAT CVTLFDGTNG LLTAQHVVDD FYEGDPRKTL KVVSTRNGNK IPLDEFRVTY TSEKRDQLLM HGPPNWEGVL ACKAVHMIPA SSVAKSKATF FALSDGEWHS SNAELVGTSK CGKFISVLSD TKSGHSGTPY FNGKSVLGVH IGSPKEFESE NVNYMSPIPR FPGLTSPNYI FETTALAGKF FSQEEVEELM EDFSLQEIYS IATARGKYIK YEACPGEETF HDVLTESSPM QGEGRAAPTA GTTGNRKHPR EIRRKWKKPS CCSFYTAGTL GENCTASHVH CTSKEEYDEW PRCWCQIAGH DCHYRSNLRD KEGSDRQNGF EIDRETSGRD TIVDGHEEAP LKRAEKIQEQ AKQFGRFFKT QYHWERAAEV CPGFIKVGEL PKFYFSKQKG CSDWGTKLTS LHPELEEKTR GFGWPKFGPA AELKSLRLQA ARWLERAEQV KIPSTEERER VVRKCVEAFS PTQTRGPMAT RGNKLSWNNF LEDFKTAVFS LELEAGVGVP YVAYGRRTHR GWIEDPDLLP VLARFTFDRL QKLSEVKFEH MSPEQLVQEG LCDPIRLFVK GEPHKQSKLD EGRYRLIMSV SLVDQLVARV LFQNQNKREI ALWRAIPSKP GFGLSTDGQV VDFMQALSAQ VGVNTAELLQ NWKSHLIPTD CSGFDWSVSD WLLEDEMEVR NRLTLDINDL TRRLRAGWLK CLANSVLCLS DGTLLSQQVP GVQKSGSYNT SSSNSRIRVM AAYHSGASWA IAMGDDALES VDADLSRYSS LGFKVEVSSQ LEFCSHIFEE ENLAVPVNKA KMLYKLIHGY EPECGNLEVL TNYLAACFSI LNELRSDQEL VASLYQWLVL PVQPQKI

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