Recode v. 2.0 / Database of translational recoding events.
Details for "r200560"
| Accession number | r200560 [export] |
| Locus name | orf1a-orf1b |
| Recode1 name | pol_m_vir_mav |
| Description | viral or mobile polyprotein |
| Recode status | Reviewed |
Organism
| Genomic class | Viral Genome (Virus) |
| Organism | Mink astrovirus [details] |
Sequence
| GenBank IDs | NC_004579 |
| Sequence | RNA of 4145 nucleotides [sequence] |
| Organisation | Trans/Interaction (1)
|
Recoding event
| Event type | -1 Frameshifting (position: 2,595) |
| Description | potentional secondary structure downstream of frameshifting site. This is the CDS part of the sequence. |
| Models | HMM |
ATGGCTAACA ACACTACCAG CGCTCTTCAC CCTCGTGGCT CTGGCCAGCG CTGTGTCTAT GACACAGTGC
TCCGGTTTGG GGACCCCGAT GCACGTCGCA GGGGTTTCCA ATTGGACGAG GTGTCACATA ATAAGTTGTG
TGACATTTTT GACAGCGGCC CGCTCCACTT CGCTTTTGGT GATCTTAAAG TGATGAAGGT GGCGGGTGGT
GTGGTCACAC CGCATAAAAC AGTTGTCAAA ACAGTCTATG TCTCAGGTGT TCAAGAGGGT AACGATTATG
TCACTTTTGC CTTCACGCCT GGACCTAACG AGTGGCGCGA AGTTGATCCC CGCATCGACA AGCGCACAGC
ACTCGTCGGT GTCCTTGTGC AAGAACATAA AAAATTGGAC TCAGACCTTA AGGAGTCGCG CCGTGAGTTG
TCCCAGCTCA AGTTGGAGCA CTCACTGTTG AGACATGACT ATGAGCGCTT GGTCCGTGAA AAGCCTGGTC
CTGCTATGAG AACTTTTAAA TTCTCAGCTG TCATCTTTTA TGCGTTTTTC CTTGGTTTCC TGCTTATGTC
TGCTGTCAAG GGTGAGGTGT ATGGTCGCTG TCTTGACAGC GAGCTTAACC TCAATGGCAA CCCTGAAGTG
TGTTTGCATT GGGAAGAGGT TAAATCTTTT AGCCTCCAGG TTGCCCTTGC AGACTTCTGG AACATGACCT
TGGACTATTA CGCTACTGTG GCACCACAAT CGCCACTTAT GGACCTTGCA CTGGGCTACT TCCCCTACTT
TGCTAACTGG CACATGGCGG CTTTCCTTGT TGGCACTGCA CACGTTGTGG CGGCCGAACG GCCGCTCTAT
ATGCTAGTGA CACTTGTTTT AGCAACATTG TCAAGGTTCC AACTGGTAGC ACTTGCCGCC GTCCCAATGT
TGGACATGCC GTCCTCAATT GGTTTGTGGG TTACAATGGT CTTGTTTGCC ATTGATCAGG CCTTTGCCAT
TTTAGCTTCA GTGCTAATCT CGGTACTTTT ACTCATTCTG TGTCTTGCTA TGAATGATGT TGATTATGGC
GCGCTCCTAC GCGGCTGTGT TACTCTGGTT AGCGCCACTG TCTTTTCACA TCTTGTGAGT TTCTTGCACG
CGCCAGGCTG GTTTACGATA ATTGCCATCC TCATCTATCG TATACCTAAA GTCCTTTCAT ATGTCAGTGC
CGAGCGTGTT GACATTAAGG GCCCTGATGG TAAGATTAAA GAGACACAGA ATGCCAACCC ATCTTGGATC
ACCAAGATGA GTGGCCTGAA GAACTTCTTC CAGCGTGCTT TCCGACAGAA GGTACGTACG GGGGTAAACC
CGACAACCCG TATCATTCCC AACTCGTTGG TGGTGATTGA TGCTAAGGAT GGTAGGGGCA CTGGCTTCCG
GGTGAGAAAC TACCTTGTCA CTGCTGGCCA CGTTGTTGGC GCGGACACTA CTGTCCGTGT CCGCTGGGCT
GATGTCACAT CCTTCGCCCA CGTGGTCTAT CGTGTCCCGA ATAAAGATAT TGTGTTGCTG ACTTTACCCG
CTGAATATAA CAGTTTACAC TCCTACAAGC TTGCAAAAGA GGTTGTTGAT GGCACGGTTG TGGTTGTCTC
CAATGGTGAT GGGGGCGCCC TTTCGGTTGG GATCTCTGAA GGTGTCATTG TAGGTGAGAG TATGACCTAC
GCGATAAACA CGGCCGATGG TATGAGTGGT TCACCACTCA CCACCACGGA TGGCCGCCTA ATTGGCGTCC
ACCAACAAAA CACCGGGTTT ACCGGCGGGG CCGTGATTTT CCGTGATACT GATTTCCCGC AACCGAAGAA
GCCACAGCGT GAGGCAGACT TGGAGGCTAA GGTGGCTGAA CTTGAAAAAG CTCTGGCAGC CTATACCCAG
TCCGCCACCG GCGAGGATAT CGTCGGCTTG GTTCGAGTTG CCATACAGCG GGAGATGGAA GTCCTCAGGA
AAGAACTCAG CAATGAGTTT GGCCAGGCTA AGGGTAAGAC CAAACATAAG CGCCGCATCA TGGCTGCCGC
CCGCTCGGGT GGCAAGCGTA AGCCGGGCAA GGTCTGGACC GAGGAAGAGT ACAAGAAACT CCTCGAGGAA
GGGTTCACCC GTGATCAGCT CAGGGAAATG GCAGAAGCAG CTAGGGAAGC TGACGACGAC TTTGATGACT
ATGAGGAAGA GAAGAATGAG GTTGACTACC CTGTGTGGTC TGACCATGAT TCTGACGAGG AGATTGATCG
TGACTGGTTC GGACAGAACC TTCCCACGTG GAGCTCCGCA TGGTCTGATT TTGAGCCAGA GTTGGATCCT
GATGTCACCA AGACGCTGCC CTGCCATCTT GAAGATAAGT TTTCCCTCAA ACATTATATT ATCACAGAGG
CTGACTTAAA GCACTTTGGT CAGGAGATGA AGGAGTACAT GGATCACCTT GATGCTGTCA TCAAAACCCA
CACGGAAAAA GGTAAGTGGT GCCCAAACAC CAACACTGAG GAAATCCTTA AGGACCTCAA TGCTATGTGG
TTTAAACTCA ACCACACCAT GTGGAAGAAT GGGGTGGCTC CTTTCATGCA GAGGAAGAAG CAGAAGCCAA
AAAACGGGAA GAGGGCCCCG AAAGGGGCCC AATAAACCCT GACGAGATGC GGCTTGACCA CTGGGAGAAA
ATGATGGCCC CGCCTGACGC TGGTCGCAGG CTGGTGCCTG ACGACTATCC AGTGATCGGC AAATTGCCCA
TAAATAGGCC CATCTCCGAC TGGGACGAGC CAGTCGATGA CTTGCTGAAC CTTTTGCCCC CAGCACCTGA
TTCGTCAGCC TATGGCCCTG CGGTCTGGGG CCCAGAAGCA TATGTCAAGT CCTTTGAGAA GTTCACTTAC
GCGAAACCGC GAGACTCGAT TAAGCGTGAT TTCCCACGTG AGTGGAAGTT CGCTTGTCAA GTCCTACGGC
GTGAGTTTGA TTTCCTCGAG GGCTCAGTTA TCATGGACAT CACTGCAACA TCTAAGAATG CAGATTCCAC
TTGTGCATAC CCTAAGTGTA ATTATTGGAA GACTGAAGCG GAATACCTGT CTGAAAGAGG CTATCAGGAT
TATGTGAGTG AGTACAAGCG TATTCACGGC GGGGCTCGCC CCAAGGTCCT ATGGCTCTTA TTCCTTAAGA
AGGAGATCTT GAAGGTAAAA AAAATTAATG ATTCAGACAT CCGCCAGATT GTCTGTGCTG ACCCAATCTT
TGCCAGAATT GGCAATGCGT TCGAAGAACA TCAGAACACT CTCATGAAAC ACCGCACCGC GACACGCATG
CCACAGTGTG GATGGACACC ATTTTTTAAT GGGTTTAAGC GTAGGATTGA ACGCCTTTTG TCGCGTAAGA
ATAGTGTATT CATTGAGTTT GACTGGACAC GCTACGATGG GACCATCCCA CGTGAGATCT TTGCGAAAAT
AAAGTCTTTT CGCTTCTCGT GTCTAGCGGA GGAGTTTCAG ACAGATGCAA ACAGGGCAAT GTATCAGTGG
TACTGTGACA GCCTGCTTGA CAGATATGTC TTAATGCCCA GTGGTGAGGT CACCCGTCAG ACCAAGGGCA
ACCCATCAGG TCAAATTTCA ACAACCATGG ACAACAATTT GTGCAACGTG TTCTTCCAGG CATTTGAGTA
TGCCTATATC CATCCAGAGA AGAGCATTGA AGAGCTACGG GAGTCGTGGG ACAGGTGTGA CTCGCTAATT
TATGGTGATG ACCGCTTGAC AACATTCGAC CACGTTCCCC CGGACTATGT GGACCGTGTT GTCCATATGT
ATAAGGATGT TTTTGGCATG TGGGTTAAAC CTGAAAAGGT TATCGTGTCC GACACACCAG TCGGGCTTTC
CTTCTGTGGT TTCACAGTTG GACCAGATCT AATGCCAGTT CCAACAGACT GCGATAAGTT AGTTGCATCC
TTAGTGACAC CCACCAAGAA GCTTCAGGAT ATCGTTGCAC TCTACTCTAA AGTCCTGTGT TACAGAATTC
TTGGGCACAA TTTGTCAGAT GAGCATGAGT TTAAGCGATA CGTTCGTGTC GCGCTTGAGG TCTTAGCTAG
GCACATCCGC AACTTGGGCG GCGAGGAGCC CGTCCATGTC ACGGAGCGAC TGCTTGATAA ACTTTGGAGG
GGAGGACCAA AGTGA
Products
| Product | orf1a |
| Description | RNA-dependent RNA polymerase |
MANNTTSALH PRGSGQRCVY DTVLRFGDPD ARRRGFQLDE VSHNKLCDIF DSGPLHFAFG DLKVMKVAGG
VVTPHKTVVK TVYVSGVQEG NDYVTFAFTP GPNEWREVDP RIDKRTALVG VLVQEHKKLD SDLKESRREL
SQLKLEHSLL RHDYERLVRE KPGPAMRTFK FSAVIFYAFF LGFLLMSAVK GEVYGRCLDS ELNLNGNPEV
CLHWEEVKSF SLQVALADFW NMTLDYYATV APQSPLMDLA LGYFPYFANW HMAAFLVGTA HVVAAERPLY
MLVTLVLATL SRFQLVALAA VPMLDMPSSI GLWVTMVLFA IDQAFAILAS VLISVLLLIL CLAMNDVDYG
ALLRGCVTLV SATVFSHLVS FLHAPGWFTI IAILIYRIPK VLSYVSAERV DIKGPDGKIK ETQNANPSWI
TKMSGLKNFF QRAFRQKVRT GVNPTTRIIP NSLVVIDAKD GRGTGFRVRN YLVTAGHVVG ADTTVRVRWA
DVTSFAHVVY RVPNKDIVLL TLPAEYNSLH SYKLAKEVVD GTVVVVSNGD GGALSVGISE GVIVGESMTY
AINTADGMSG SPLTTTDGRL IGVHQQNTGF TGGAVIFRDT DFPQPKKPQR EADLEAKVAE LEKALAAYTQ
SATGEDIVGL VRVAIQREME VLRKELSNEF GQAKGKTKHK RRIMAAARSG GKRKPGKVWT EEEYKKLLEE
GFTRDQLREM AEAAREADDD FDDYEEEKNE VDYPVWSDHD SDEEIDRDWF GQNLPTWSSA WSDFEPELDP
DVTKTLPCHL EDKFSLKHYI ITEADLKHFG QEMKEYMDHL DAVIKTHTEK GKWCPNTNTE EILKDLNAMW
FKLNHTMWKN GVAPFMQRKK QKPKNGKRAP KGAQ
| Product | orf1a-orf1b |
| Description | putative protease and RNA-dependent RNA polymerase. |
| Modifications | 2595..2595:ribosomal_frameshift |
MANNTTSALH PRGSGQRCVY DTVLRFGDPD ARRRGFQLDE VSHNKLCDIF DSGPLHFAFG DLKVMKVAGG
VVTPHKTVVK TVYVSGVQEG NDYVTFAFTP GPNEWREVDP RIDKRTALVG VLVQEHKKLD SDLKESRREL
SQLKLEHSLL RHDYERLVRE KPGPAMRTFK FSAVIFYAFF LGFLLMSAVK GEVYGRCLDS ELNLNGNPEV
CLHWEEVKSF SLQVALADFW NMTLDYYATV APQSPLMDLA LGYFPYFANW HMAAFLVGTA HVVAAERPLY
MLVTLVLATL SRFQLVALAA VPMLDMPSSI GLWVTMVLFA IDQAFAILAS VLISVLLLIL CLAMNDVDYG
ALLRGCVTLV SATVFSHLVS FLHAPGWFTI IAILIYRIPK VLSYVSAERV DIKGPDGKIK ETQNANPSWI
TKMSGLKNFF QRAFRQKVRT GVNPTTRIIP NSLVVIDAKD GRGTGFRVRN YLVTAGHVVG ADTTVRVRWA
DVTSFAHVVY RVPNKDIVLL TLPAEYNSLH SYKLAKEVVD GTVVVVSNGD GGALSVGISE GVIVGESMTY
AINTADGMSG SPLTTTDGRL IGVHQQNTGF TGGAVIFRDT DFPQPKKPQR EADLEAKVAE LEKALAAYTQ
SATGEDIVGL VRVAIQREME VLRKELSNEF GQAKGKTKHK RRIMAAARSG GKRKPGKVWT EEEYKKLLEE
GFTRDQLREM AEAAREADDD FDDYEEEKNE VDYPVWSDHD SDEEIDRDWF GQNLPTWSSA WSDFEPELDP
DVTKTLPCHL EDKFSLKHYI ITEADLKHFG QEMKEYMDHL DAVIKTHTEK GKWCPNTNTE EILKDLNAMW
FKLNHTMWKN GVAPFMQRKK QKPKNREEGP ERGPINPDEM RLDHWEKMMA PPDAGRRLVP DDYPVIGKLP
INRPISDWDE PVDDLLNLLP PAPDSSAYGP AVWGPEAYVK SFEKFTYAKP RDSIKRDFPR EWKFACQVLR
REFDFLEGSV IMDITATSKN ADSTCAYPKC NYWKTEAEYL SERGYQDYVS EYKRIHGGAR PKVLWLLFLK
KEILKVKKIN DSDIRQIVCA DPIFARIGNA FEEHQNTLMK HRTATRMPQC GWTPFFNGFK RRIERLLSRK
NSVFIEFDWT RYDGTIPREI FAKIKSFRFS CLAEEFQTDA NRAMYQWYCD SLLDRYVLMP SGEVTRQTKG
NPSGQISTTM DNNLCNVFFQ AFEYAYIHPE KSIEELRESW DRCDSLIYGD DRLTTFDHVP PDYVDRVVHM
YKDVFGMWVK PEKVIVSDTP VGLSFCGFTV GPDLMPVPTD CDKLVASLVT PTKKLQDIVA LYSKVLCYRI
LGHNLSDEHE FKRYVRVALE VLARHIRNLG GEEPVHVTER LLDKLWRGGP K
Publication
- Bekaert M, Rousset JP. (2005) An extended signal involved in eukaryotic -1 frameshifting operates through modification of the E site tRNA. Mol Cell. 17(1):61-68. [abstract]