Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200561"

Accession numberr200561 [export]
Locus nameP1-P2
Recode1 namepol_m_vir_bydv-gav
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismBarley yellow dwarf virus-GAV [details]

Sequence

GenBank IDsNC_004666
SequenceRNA of 2603 nucleotides [sequence]
OrganisationComplex structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,017)
Descriptionthe nucleotide sequence 4819?4913 of the 3' translation enhancer (3'TE) and the sequence 5046?5287 of the 3'-frameshift signal (3'FSS) are involved in translation control. This is the CDS part of the sequence.
ModelsHMM
ATGTTCTTCG AAATTCTTAT AGGAGCTAGT GCCAAGGCGG TCAAAGATTT CATCAGCCAC TGCTACTCTA GACTGAAATC TATATATTAT TCTTTCAAAC GATGGCTGAT GGAAATATCT GGGCAATTTA AGGCCCATGA CGCCTTTGTC AATATGTGCT TTGGGCACAT GGCTGACATT GAAGACTTCG AGGCTGAACT CGCTGAAGAG TTCGCCGAGA GGGAGGATGA GGTGGAAGAG GCCAGGAGCC TCTTGAAACT GCTGGTCGCC CAAAAATCTA AATCCGGGGT GACCGAGGCT TGGAACGACT TCTTCTTGAA GTCGAGGGGC GGTGTTTACG CACCGCTCTC TTGTGAGCCC ACCAAGCAGG AACTAGAAGT CAAGAGCGAG AAGCTCGAGA GGCTTCTAGA CGAACAGCAC CAATTCGAGG TGCGAGCGGC CAAGAAATAC ATTAAAGAAA AGGGCCGCGG CTTCATCAAC TGCTGGAACG ACTTGCGTAG CCGTCTCAGA TTGGTGAAGG ATGTCAAGGA TGAGGCGAAG GACAATGCCA AAGTCGCTGC AAAGATTGGA GCGGAGATGT TCGCCCCCGT TGACGTGCAG GACCTCTACA GCTTTACAGA GGTCAAGAAG GTGGAGACCG GCCTCACAAA GGAGGTCGTA AAAGAAGTGA ACGGTGAAGA AACGAAACGC CTCGAACCCA TCTTGGAAGA GGTGCGATCC ATCAAGGACA CCGCCGAAGC TAGGGACGCC GCCTCCACTT GGATAACAGA GACAGTCAAA TTGAAAAATT CAACCCTTAA CGCTGATGAA CTGTCTCTCG CCACCATCGC CCGCTACGTT GAAAATGTAG GGGACAAATT TAAACTCGAC ATTGCCAGCA AGACATATCT AAAGCAATGC GCAACGATGT CTGTACCAAT TCCAACCACC AAGGACATCA AAATGAAGAT GGTGTTGCAG AGTCCTGAAG CACGTGCCAG GCGGGAACGC ATGGACGTGC TTGACTCTGT GGGTTTTTAG AGGGGCTCTG TACCGCCTCT GGTTTTGAGA GCCCATTTCC AATTCTCGGG CTGCCAGAGA TTGCGGTCAC AGACGGAGCC CGGCTCCGTA AGGTTAGTAG CAATATTAGA TACCTTAGCC AAACCCACTT AGGTTTAGTA TATAAGGCAC CAAATGCCTC CCTGCACAAC GCGCTTGTGG CAGTGGAGAG AAGAGTTTTT ACAGTAGGAA AGGGGGACGA ACCTATTTAC CCCCCCCGCC CTGAGCACGA CATTTTCACT GATACAATGG ACTACTTTGG TAAGTCCATA ATCGACGAGG TGGGATACTG TAAAACATAC CCAGCGCAAC TCCTGGCTAA CAGCTATAGC GCAGGAAAAA GGGCCATGTA TCACAAAGCC ATTGCATCCC TGAAAACAAC CCCCTATCAG CAGAGGGATG CCAATGTGCA AGCTTTCCTC AAGAAGGAAA AACATTGGAT GACCAAGGAC ATCGCTCCCC GATTGATATG CCCCCGCAGC AAGCGGTACA ACATTATCCT AGGAACTCGT TTGAAATTCA ACGAGAAGAA GATCATGCAC GCCATCGATA GTGTGTTTGG ATCCCCCACT GTGCTTTCTG GTTATGATAA CTTCAAGCAA GGAAGAATCA TAGCCAAGAA GTGGCAAAAG TTTGCATGCC CCGTCGCTAT CGGCGTGGAT GCTAGCCGCT TTGACCAACA CGTGTCAGAG CAGGCGCTTA AGTGGGAACA CGGGATATAC AATGGAATCT TCGGTGATAG CGAATTGGCT CTTGCACTTG AACACCAAAT ATCCAACAAC ATCAAAATGT TCGTAGAGGA CAAAATGCTT AGGTTCAAGG TTAGAGGCCA TAGAATGTCC GGTGACATTA ACACCAGCAT GGGAAACAAG CTAATAATGT GCGGCACGAT GCACGCATAT TTCAAGAAGC TGGGTGTTGA AGCAGAACTA TGCAACAATG GAGACGACTG TGTCATCATC ACTGACAGAG CCAATGAGAA GCTCTTTGAT GGCATGTACG ATCACTTTCT CCAGTATGGT TTCAACATGG TGACCGAAAA ACCAGTTTAC GAACTGGAAC AATTGGAGTT TTGCCAGTCA AAACCGGTCT CTATTAATGG AAAATACAGA ATGGTCAGAA GGCCCGATAG CATAGGCAAA GACAGCACAA CACTACTGAG CATGCTCAAC CAATCCGACG TCAAAAGTTA CATGTCGGCT GTGGCTCAGT GTGGTTTGGT GCTTAACGCT GGAGTACCCA TACTCGAAAG TTTCTATAAA TGCCTATATA GAAGCTCTGG GTACAAGAAA GTGAGTGATG AATTCATCAA AAACGTCATT TCGTATGGAA CAGATAAGAG ACTACAAGGT AGACGTACCT TTGAAGACAC ACCTATCACC AATCATAGCA GGATGTCCTA CTGGGAATCA TTCGGAGTTG ACCCTAAGAT ACAACAAATT GTCGAGCGGT ACTACGACAA TCTTACGGTG AGTGCCCAAC TCCAGAGCGT GAAGGTGACT ACTCCACATC TGCAATCAAT ACTACTTTCC ATACCGGAAA ACCACTCACA AAACGACTAT TAA

Products

ProductP1
DescriptionRNA-dependent RNA polymerase
MFFEILIGAS AKAVKDFISH CYSRLKSIYY SFKRWLMEIS GQFKAHDAFV NMCFGHMADI EDFEAELAEE FAEREDEVEE ARSLLKLLVA QKSKSGVTEA WNDFFLKSRG GVYAPLSCEP TKQELEVKSE KLERLLDEQH QFEVRAAKKY IKEKGRGFIN CWNDLRSRLR LVKDVKDEAK DNAKVAAKIG AEMFAPVDVQ DLYSFTEVKK VETGLTKEVV KEVNGEETKR LEPILEEVRS IKDTAEARDA ASTWITETVK LKNSTLNADE LSLATIARYV ENVGDKFKLD IASKTYLKQC ATMSVPIPTT KDIKMKMVLQ SPEARARRER MDVLDSVGF
ProductP1-P2
Descriptionputative protease and RNA-dependent RNA polymerase.
Modifications1017..1017:ribosomal_frameshift
MFFEILIGAS AKAVKDFISH CYSRLKSIYY SFKRWLMEIS GQFKAHDAFV NMCFGHMADI EDFEAELAEE FAEREDEVEE ARSLLKLLVA QKSKSGVTEA WNDFFLKSRG GVYAPLSCEP TKQELEVKSE KLERLLDEQH QFEVRAAKKY IKEKGRGFIN CWNDLRSRLR LVKDVKDEAK DNAKVAAKIG AEMFAPVDVQ DLYSFTEVKK VETGLTKEVV KEVNGEETKR LEPILEEVRS IKDTAEARDA ASTWITETVK LKNSTLNADE LSLATIARYV ENVGDKFKLD IASKTYLKQC ATMSVPIPTT KDIKMKMVLQ SPEARARRER MDVLDSVGFL EGLCTASGFE SPFPILGLPE IAVTDGARLR KVSSNIRYLS QTHLGLVYKA PNASLHNALV AVERRVFTVG KGDEPIYPPR PEHDIFTDTM DYFGKSIIDE VGYCKTYPAQ LLANSYSAGK RAMYHKAIAS LKTTPYQQRD ANVQAFLKKE KHWMTKDIAP RLICPRSKRY NIILGTRLKF NEKKIMHAID SVFGSPTVLS GYDNFKQGRI IAKKWQKFAC PVAIGVDASR FDQHVSEQAL KWEHGIYNGI FGDSELALAL EHQISNNIKM FVEDKMLRFK VRGHRMSGDI NTSMGNKLIM CGTMHAYFKK LGVEAELCNN GDDCVIITDR ANEKLFDGMY DHFLQYGFNM VTEKPVYELE QLEFCQSKPV SINGKYRMVR RPDSIGKDST TLLSMLNQSD VKSYMSAVAQ CGLVLNAGVP ILESFYKCLY RSSGYKKVSD EFIKNVISYG TDKRLQGRRT FEDTPITNHS RMSYWESFGV DPKIQQIVER YYDNLTVSAQ LQSVKVTTPH LQSILLSIPE NHSQNDY

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