Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200563"

Accession numberr200563 [export]
Locus nameP1-P2
Recode1 namepol_m_vir_bydv-pas
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismBarley yellow dwarf virus-PAS [details]
AcronymBYDV-PAS

Sequence

GenBank IDsNC_002160
SequenceRNA of 2606 nucleotides [sequence]
OrganisationComplex structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,020)
Descriptionthe nucleotide sequence 4820?4936 of the 3' translation enhancer (3'TE) and the sequence 5058?5198 of the 3'-frameshift signal (3'FSS) are involved in translation control. This is the CDS part of the sequence.
ModelsHMM
ATGCTTCTTT TTGAACTTTT GATCGGCGCT AGCGTCAAAG CTGTAAAAGA CTTCATCAGC CACTGCTACT CCAGACTAAA AAGCATATAT TATGCTTTCA AAAGATGGTT GATGGAGATC TCTGGGCAAT TTAAGGCCCA CGACGCTTTT GTCAACATGT GCTTCGGGCA CATTGCTGAC ATCGAAGACT TCGAGGCGGA ACTCGCTGAA GAGTTCGCCT TGAAGGAGGA TGAAATCGAG GAGGCGAGAA GCCTCATGCG TCTGCTCACC GCCCAAAAAG CAAAAACTGG GGTGGTGGAG GCTTGGACCG ACTTCTTTGT GAAGTCGAGA GGCGGGGTTT ATGCCCCGCT TTCCTGCGAG CCTTCCAAAG CAGAGCTTGA GGCCAAAGCC GACAAGCTCG AAAGACTACT TGAGGACATG CACAAATTTG AGGTGCAAGC GGCAAAAAAA TACATAAAAG AAAAGGGCCG CGGGTTCATC AACTGCTGGA ACGACCTTCG TTCCAGACTC AAGTTAGTCA AGGAGGTAAA TGAAGAGGCC AAAGACAACA TCAAGGCCGC CTCCAAGATC GGCGTGGAAT TCTCCGCACC CACCAACATC CAGGACCTCT ACGCCTTCAC CAAGGTTGAA AAGGTCGAGA CTGGCCTCAT GAAGGAGGTC ACCAAAATGG TGCACGGAGA AGAAACCAAG CACATGGAGC CGATAACTGA AGACATGCGC TCCATCAAGG ACACCGCGGA AGACCGAGAG GCCGCCTCCA AGTGGATAAC GGAGGTGGTT AAATTGAAAA ATTCAACCCT GTCTGCCGAC GAGCTGTCCC TGGCCACCAT CGCCCGATAT GTGGAAAACA TCGGGGAAAA ATACAAGCTC GACATTGCCT CCAAAACATA TCTCAAGCAA TGCGCAATGA TGTCTGTTCC AATTCCTACT CAAAAAGACA TCAAAATGAA GATGGTGATC CAGAGCCCTG CAGCACGAGC TGCGCGTGAG CGCGTAGCTG TGCTTGATTC TCAGGGTTTT TAGAGGGGCT CTGTGCCGCC TCCGGTTTTG AAAGTCCCTT TTCTCTATTA AGACTGCCGG AGATTAAGGT CACAGACGGA GCCCGTTTAC GTAAGGTTAG TAGTAATATT AGGTACCTAA CCCAAACCCA CCTCGGCTTG GTATACAAAG CCCCAAATGC CTCCCTGCAC AATGCCTTGG TTGCAGTGGA GAGAAGAGTG TTTACAGTAG GAAAGGGGGA CAAAGCTATA TACCCCCCCC ACCCGGAACA TGACATTTTC ACTGAGACTA TGGACTACTT CGCAGAGTCC ATAATTGACA AGGTGGGATA CTGTAAAACA TACCCTGCAC AGCAATTAGC TCTTAGTTAT AGTGCAGGGA AGCGGTCACA ATACTTCAAA GCCATAGAGT CTCTCAAGAA GGAACCTTAT CAACAAAAGG ACTCTAATGT GCAGGCATTC CTCAAGAAGG AGAAGCATTG GATGACCAAA GCCATCGCCC CGCGCCTAAT CTGCCCCCGC TCTAAGCGGT ACAATATCAT CCTTGGAACT CGTTTAAAAT TCAACGAGAA GAAGATCATG CATGCTATCG ATAGTGTGTT TAGATCCCCC ACTGTGCTTT CTGGCTATGA CAACTTCACT CAAGGAAGAA TCATAGCCAG CAAGTGGCAA AAGTTTGCAT CACCCGTTGC TATCGGTGTT GATGCTAGCC GCTTCGACCA ACACGTGTCT GAGCAGGCGC TTAAGTGGGA ACACGGGATA TACAATGGCA TATTTGGCGA CACTGAATTG GCCACTGCTC TCGAACATCA ACTTGTAAAT AATATCAAAA TGTTCGTTGA GGACAAGATG CTTTCATTTC AAGTGAGAGG CCACAGAATG TCCGGGGATA TAAACACCAG CATGGGAAAC AAACTGATAA TGTGTGGCAT GATGCACGCA TACTTTAAAA TGCTGGGTGT TGAAGCTGAA CTGTGCAACA ATGGGGACGA CTGTGTCATC ATCACTGAGA GAGCCAATGA GAAGCTCTTT GATGGCATGT ACGACCACTT CCTAAAGTAC GGCTTCAACA TGGTGACGGA AGCCCCAGTT TACGAACTCG GGGAGCTTGA ATTTTGTCAA TCAAAACCCG TCAGAATAGA TGGCAAATAC AGGATGGTGA GGAGACCAGA CTGTATTGGG AAAGATAGCT GCACACTTCT GAGCATGTTG AATGAAGCTG ACGTCAAGAG TTATATGTCA GCTGTGGCTC AGTGTGGGCT CGTTCTGAAC GCGGGTGTAC CCATTCTGGA AAGCTTCTAC CGCTGTTTGT ACAGAAGCTC TGGGTACAAG AAAGTAAGTG AGGAATACAT CAAAAACGTC ATATCATATG GAACAGATGA ACGCCTTCAA GGTAGACGTA CCTTCAAGGA GACACCTATC ACAAGCGACA ATCGAATGTC GTACTGGGAA TCATTCGGAG TTGACCCTAA GATACAACAA CTCGTCGAGC GGTACTTCGA CGATCTTACG GTAAGTGCCC AACTCCAAAG TGTGAAGGTG ACATCTCCAC ATCTGCAATC AATCCTCCTC TCCATTCCGG AGAACAACTC GCAAAACGAA TATTAA

Products

ProductP1
DescriptionRNA-dependent RNA polymerase
MLLFELLIGA SVKAVKDFIS HCYSRLKSIY YAFKRWLMEI SGQFKAHDAF VNMCFGHIAD IEDFEAELAE EFALKEDEIE EARSLMRLLT AQKAKTGVVE AWTDFFVKSR GGVYAPLSCE PSKAELEAKA DKLERLLEDM HKFEVQAAKK YIKEKGRGFI NCWNDLRSRL KLVKEVNEEA KDNIKAASKI GVEFSAPTNI QDLYAFTKVE KVETGLMKEV TKMVHGEETK HMEPITEDMR SIKDTAEDRE AASKWITEVV KLKNSTLSAD ELSLATIARY VENIGEKYKL DIASKTYLKQ CAMMSVPIPT QKDIKMKMVI QSPAARAARE RVAVLDSQGF
ProductP1-P2
Descriptionputative protease and RNA-dependent RNA polymerase.
Modifications1020..1020:ribosomal_frameshift
MLLFELLIGA SVKAVKDFIS HCYSRLKSIY YAFKRWLMEI SGQFKAHDAF VNMCFGHIAD IEDFEAELAE EFALKEDEIE EARSLMRLLT AQKAKTGVVE AWTDFFVKSR GGVYAPLSCE PSKAELEAKA DKLERLLEDM HKFEVQAAKK YIKEKGRGFI NCWNDLRSRL KLVKEVNEEA KDNIKAASKI GVEFSAPTNI QDLYAFTKVE KVETGLMKEV TKMVHGEETK HMEPITEDMR SIKDTAEDRE AASKWITEVV KLKNSTLSAD ELSLATIARY VENIGEKYKL DIASKTYLKQ CAMMSVPIPT QKDIKMKMVI QSPAARAARE RVAVLDSQGF LEGLCAASGF ESPFSLLRLP EIKVTDGARL RKVSSNIRYL TQTHLGLVYK APNASLHNAL VAVERRVFTV GKGDKAIYPP HPEHDIFTET MDYFAESIID KVGYCKTYPA QQLALSYSAG KRSQYFKAIE SLKKEPYQQK DSNVQAFLKK EKHWMTKAIA PRLICPRSKR YNIILGTRLK FNEKKIMHAI DSVFRSPTVL SGYDNFTQGR IIASKWQKFA SPVAIGVDAS RFDQHVSEQA LKWEHGIYNG IFGDTELATA LEHQLVNNIK MFVEDKMLSF QVRGHRMSGD INTSMGNKLI MCGMMHAYFK MLGVEAELCN NGDDCVIITE RANEKLFDGM YDHFLKYGFN MVTEAPVYEL GELEFCQSKP VRIDGKYRMV RRPDCIGKDS CTLLSMLNEA DVKSYMSAVA QCGLVLNAGV PILESFYRCL YRSSGYKKVS EEYIKNVISY GTDERLQGRR TFKETPITSD NRMSYWESFG VDPKIQQLVE RYFDDLTVSA QLQSVKVTSP HLQSILLSIP ENNSQNEY

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