Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200564"

Accession numberr200564 [export]
Locus namegag-pol
Recode1 namepro_m_vir_srv1
Descriptionviral or mobile polyprotein
Recode statusValidated

Organism

Genomic classViral Genome (Virus)
OrganismMason-Pfizer monkey virus [details]
AcronymMPMV

Sequence

VariantSimian type D virus 1
GenBank IDsM11841
SequenceRNA of 2738 nucleotides [sequence]
OrganisationPseudoknot structure (1) [see structure]
Sequence (1)
Trans/Interaction (1)

Recoding event

Event type-1 Frameshifting (position: 1,827)
Descriptionapprox. 13% frameshifting with reporter gene in S. cerevisiae. This is the CDS part of the sequence.
ModelsHMM
ATGGGGCAGG AATTAAGCCA GCACGAACGT TATGTGGAAC AATTAAAACA GGCTTTAAAG ACACGGGGAG TAAAGGTTAA ATATGCTGAT CTCTTAAAGT TTTTTGATTT TGTAAAGGAT ACTTGTCCTT GGTTTCCGCA AGAGGGAACC ATAGATATCA AAAGGTGGCG TAGAGTAGGC GATTGTTTCC AAGATTATTA TAATACTTTT GGCCCTGAGA AAGTCCCAGT AACTGCCTTC TCATACTGGA ATTTAATTAA AGAATTGATA GATAAGAAAG AAGTTAACCC ACAAGTAATG GCTGCCGTGG CTCAAACTGA AGAAATCTTA AAAACTAGTT CTCATACAGA GCTTACAACA AAGCCCTCCC AAAATCCAGA CTTGGACCTT ATTTCTCTTG ATAGTGACGA TGAAGGAGCT AAAGGTTCCT CCCTAAAAGA TAAAAATTTA TCATGTACTA AAAAGCCAAA AAGATTCCCA GTTCTATTAA CAGCACAAAC TAGTGCGGAC CCTGAGGACC CCAACCCCTC AGAGGTAGAC TGGGACGGAT TAGAGGATGA GGCAGCAAAA TATCATAATC CCGATTGGCC TCCCTTCCTA ACCCGTCCAC CTCCTTATAA TAAAGCCACT CCTTCCGCAC CCACTGTAAT GGCGGTTGTT AATCCAAAAG AGGAATTAAA AGAGAAGATT GCTCAATTAG AGGAACAGAT TAAATTAGAA GAGTTACATC AAGCACTCAT TTCCAAGTTA CAAAAACTAA AAACAGGAAA TGAAACTGTC ACTAGTCCAG AAACTGCAGG GGGCTTTTCT CGCACACCTC ACTGGCCGGG GCAACATATC CCTAAAGGAA AATGCTGCGC CAGTCGAGAA AAGGAAGAAC AAACCCCAAA AGATATTTTC CCAGTAACTG AAACTGTCGA TGGGCAGGGT CAAGCCTGGA GGCACCATAA TGGTTTTGAT TTTACCGTCA TAAAAGAATT AAAAACGGCT GCCTCTCAAT ATGGGGCTAC TGCCCCATAC ACATTAGCCA TAGTAGAATC TGTAGCGGAC AATTGGCTTA CCCCTACAGA TTGGAATACA CTTGTTAGGG CAGTCCTCTC AGGAGGAGAT CATTTACTAT GGAAATCTGA GTTTTTTGAA AATTGTAGAG AAACGGCTAA AAGAAATCAA CAAGCCGGTA ATGGTTGGGA TTTTGATATG TTAACAGGCT CAGGTAACTA TTCTAGCACT GATGCACAAA TGCAATATGA TCCGGGATTG TTTGCTCAAA TTCAAGCGGC TGCTACAAAA GCCTGGAGAA AACTTCCCGT TAAGGGAGAC CCAGGAGCTT CCCTTACAGG AGTCAAACAA GGACCCGATG AGCCATTTGC AGATTTTGTA CACAGACTTA TAACAACTGC TGGGAGAATT TTTGGAAGTG CTGAGGCTGG TGTAGACTAT GTAAAACAAC TAGCATATGA AAACGCTAAT CCAGCCTGTC AGGCAGCCAT CCGCCCCTAT AGAAAGAAAA CAGATTTAAC TGGCTACATC CGCCTTTGTT CGGACATTGG GCCTTCTTAT CAACAGGGCT TAGCCATGGC CGCCGCCTTT AGCGGACAAA CTGTCAAAGA TTTTCTTAAC AACAAAAATA AAGAAAAAGG AGGGTGTTGT TTTAAATGCG GGAGGAAAGG ACATTTTGCA AAAAATTGTC ATGAACATAT ACATAACAAT TCTGAAACAA AGGCTCCTGG ACTCTGTCCC AGGTGTAAAA GAGGGAAACA TTGGGCCAAT GAATGCAAAT CCAAAACTGA TAGTCAAGGA AACCCACTAC CACCCCATCA GGGAAACGGA CTGAGGGGCC AGGCCCAGGC CCCGAAACAA GCTTATGGGG CGGTCAGCTT TGTTCCAGCC AACAAAAACA ACCCATTTCA AAGCTTACCA GAGCCACCCC AGGAAGTGCA GGATTGGACC TCAGTTCCAC CTCCCACACA GTATTAACAC CGGAAATGGG GCCCCAAGCG TTAAGCACTG GAATATATGG GCCCCTACCT CCCAACACTT TTGGATTAAT CTTAGGCAGA AGTAGCATTA CTATAAAAGG TCTACAAGTT TATCCAGGAG TAATTGATAA TGACTATACT GGGGAAATTA AAATAATGGC AAAGGCTGTC AACAATATTG TTACTGTTCC TCAAGGCAAC AGGATAGCTC AATTAATCCT CCTACCTCTA ATTGAGACAG ACAATAAAGT ACAACAACCC TATAGAGGAC AAGGAAGTTT TGGATCCTCA GACATATATT GGGTCCAACC TATTACCTGT CAGAAGCCCT CCTTAACATT ATGGTTAGAT GATAAAATGT TCACAGGATT AATCGATACG GGAGCTGATG TCACTATCAT CAAGCTAGAG GACTGGCCTC CTAATTGGCC TATAACAGAT ACCTTAACCA ATTTAAGAGG TATAGGACAA AGCAACAACC CTAAGCAAAG TTCTAAATAT CTTACTTGGA GAGATAAAGA AAATAATTCT GGTCTCATTA AACCGTTTGT TATTCCTAAT TTACCTGTCA ACCTTTGGGG CAGAGATCTC CTTTCTCAAA TGAAAATTAT GATGTGTAGT CCTAGTGACA TAGTCACTGC CCAAATGTTA GCCCAAGGCT ACAGCCCCGG AAAAGGATTA GGAAAAAACG AAAATGGCAT TCTACATCCT ATCCCAAATC AAGGACAATT TGACAAAAAG GGATTTGGAA ATTTTTAA

Products

Productgag
Descriptiongag polyprotein
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KTSSHTELTT KPSQNPDLDL ISLDSDDEGA KGSSLKDKNL SCTKKPKRFP VLLTAQTSAD PEDPNPSEVD WDGLEDEAAK YHNPDWPPFL TRPPPYNKAT PSAPTVMAVV NPKEELKEKI AQLEEQIKLE ELHQALISKL QKLKTGNETV TSPETAGGFS RTPHWPGQHI PKGKCCASRE KEEQTPKDIF PVTETVDGQG QAWRHHNGFD FTVIKELKTA ASQYGATAPY TLAIVESVAD NWLTPTDWNT LVRAVLSGGD HLLWKSEFFE NCRETAKRNQ QAGNGWDFDM LTGSGNYSST DAQMQYDPGL FAQIQAAATK AWRKLPVKGD PGASLTGVKQ GPDEPFADFV HRLITTAGRI FGSAEAGVDY VKQLAYENAN PACQAAIRPY RKKTDLTGYI RLCSDIGPSY QQGLAMAAAF SGQTVKDFLN NKNKEKGGCC FKCGRKGHFA KNCHEHIHNN SETKAPGLCP RCKRGKHWAN ECKSKTDSQG NPLPPHQGNG LRGQAQAPKQ AYGAVSFVPA NKNNPFQSLP EPPQEVQDWT SVPPPTQY
Productgag-pol
Descriptiongag capsid polyprotein, protease.
Modifications1827..1827:ribosomal_frameshift
MGQELSQHER YVEQLKQALK TRGVKVKYAD LLKFFDFVKD TCPWFPQEGT IDIKRWRRVG DCFQDYYNTF GPEKVPVTAF SYWNLIKELI DKKEVNPQVM AAVAQTEEIL KTSSHTELTT KPSQNPDLDL ISLDSDDEGA KGSSLKDKNL SCTKKPKRFP VLLTAQTSAD PEDPNPSEVD WDGLEDEAAK YHNPDWPPFL TRPPPYNKAT PSAPTVMAVV NPKEELKEKI AQLEEQIKLE ELHQALISKL QKLKTGNETV TSPETAGGFS RTPHWPGQHI PKGKCCASRE KEEQTPKDIF PVTETVDGQG QAWRHHNGFD FTVIKELKTA ASQYGATAPY TLAIVESVAD NWLTPTDWNT LVRAVLSGGD HLLWKSEFFE NCRETAKRNQ QAGNGWDFDM LTGSGNYSST DAQMQYDPGL FAQIQAAATK AWRKLPVKGD PGASLTGVKQ GPDEPFADFV HRLITTAGRI FGSAEAGVDY VKQLAYENAN PACQAAIRPY RKKTDLTGYI RLCSDIGPSY QQGLAMAAAF SGQTVKDFLN NKNKEKGGCC FKCGRKGHFA KNCHEHIHNN SETKAPGLCP RCKRGKHWAN ECKSKTDSQG NPLPPHQGNR TEGPGPGPET SLWGGQLCSS QQKQPISKLT RATPGSAGLD LSSTSHTVLT PEMGPQALST GIYGPLPPNT FGLILGRSSI TIKGLQVYPG VIDNDYTGEI KIMAKAVNNI VTVPQGNRIA QLILLPLIET DNKVQQPYRG QGSFGSSDIY WVQPITCQKP SLTLWLDDKM FTGLIDTGAD VTIIKLEDWP PNWPITDTLT NLRGIGQSNN PKQSSKYLTW RDKENNSGLI KPFVIPNLPV NLWGRDLLSQ MKIMMCSPSD IVTAQMLAQG YSPGKGLGKN ENGILHPIPN QGQFDKKGFG NF

Publications