Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200578"

Accession numberr200578 [export]
Locus nameprfB
DescriptionBacterial release factor 2
Recode statusReviewed

Organism

Genomic classBacteria (Chromosome)
OrganismBacillus clausii KSM-K16 [details]

Sequence

VariantKSM-K16
GenBank IDsNC_006582.1
SequenceDNA of 1105 nucleotides [sequence]

Recoding event

Event type+1 Frameshifting (position: 73)
DescriptionRF2 ORF0: 1.4e-07 ORF1: 9.2e-262
ATGGACATGA CAGAAATGAA GCAAGAACTA GTGGCGCTCG AGAAGCGACT ATCTGACTTT AGGGGGTCTC TTTGACGTCG CAGAAAAGGA AGAGCGGATC GCGGAGTTAG AAGAAAAAAT GGCTGATCCT GATTTTTGGA ATGACCAGGA GCAAGCGCAA GCGATCATTA ATGAAACAAA TGGTTTAAAA GAACAAGTCC ATACATTCAA AGACATGGCT GAAAGCTATG ACGACTTGGA AGTCAGTTAT GAGCTTGTTC GGGAAGAGGA CGACACTGAA CTGGCAAGTG AACTGGAATC GGGCCTTGCT GCGCTTAAAC AAAAAATGAA CCAATTTGAG TTGCAATTGC TTTTAAGTGC CCCTTACGAT AAAAACAATG CCATTTTAGA ACTCCATCCT GGCGCAGGCG GAACTGAATC CCAGGATTGG GCTTCTATGT TGCTAAGGAT GTACACGCGC TGGGCAGAAA AGCGTGGGTT TGCTGTCGAG ACGCTCGACT ATCTCCCTGG TGAGGAGGCC GGCGTCAAAA GCGTCACGCT GCTTATAAAA GGGCATAACG CATATGGCTA TTTAAAAGCA GAGAAAGGTG TGCACCGCCT CGTGCGAATT TCGCCATTTG ACTCATCCGG GAGGCGGCAT ACGTCCTTTG TGTCATGCGA AGTGATGCCG GAATTAGATG ATGCAGTTGA CATTGAACTA AATAGCGAAG ACTTAAAAAT CGATACGTAT CGTGCGAGTG GGGCGGGCGG CCAGCATGTC AACACGACTG ACTCGGCTGT GCGGATTACC CACTTGCCGA CCAATACGGT TGTGACTTGT CAGAGCGAAC GTTCCCAAAT TAAAAACCGG GAACAAGCAA TGAAAATGAT GAAAGCGAAA CTGTATCAAC TGCGGATTGA AGAGCAAGAG CGTGAACTTG CTGAAATTCG TGGCGAACAA AAAGAAATTG GGTGGGGAAG CCAAATTCGC TCCTATGTGT TCCATCCTTA TTCAATGGTG AAAGACCACC GCACTGGCTT TGAAATTGGC AATACGAACA GTGTCATGGA TGGAGAGATT GACGGGTTTA TTGACGCTTA CCTGAGACAA TCGCTGGCAA TGTAG

Product

ProductprfB
DescriptionBacterial release factor 2
Modifications72..74:ribosomal_frameshift
MDMTEMKQEL VALEKRLSDF RGSLDVAEKE ERIAELEEKM ADPDFWNDQE QAQAIINETN GLKEQVHTFK DMAESYDDLE VSYELVREED DTELASELES GLAALKQKMN QFELQLLLSA PYDKNNAILE LHPGAGGTES QDWASMLLRM YTRWAEKRGF AVETLDYLPG EEAGVKSVTL LIKGHNAYGY LKAEKGVHRL VRISPFDSSG RRHTSFVSCE VMPELDDAVD IELNSEDLKI DTYRASGAGG QHVNTTDSAV RITHLPTNTV VTCQSERSQI KNREQAMKMM KAKLYQLRIE EQERELAEIR GEQKEIGWGS QIRSYVFHPY SMVKDHRTGF EIGNTNSVMD GEIDGFIDAY LRQSLAM

Publication