Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200589"

Accession numberr200589 [export]
Locus nameprfB
DescriptionBacterial release factor 2
Recode statusReviewed

Organism

Genomic classBacteria (Chromosome)
OrganismBdellovibrio bacteriovorus HD100 [details]

Sequence

VariantHD100; DSM 50701; ATCC 1535; ICPB 3268 NCIB 9529
GenBank IDsNC_005363.1
SequenceDNA of 1132 nucleotides [sequence]

Recoding event

Event type+1 Frameshifting (position: 85)
DescriptionRF2 ORF0: 1.9e-06 ORF1: 1.9e-245
ATGTCTATCG TTACTGAAGC CTCTGAAATA AAAAGCAAAA TCGTGTCTCT CGAAGCCTTC TCGAAGGAGC TTCGGGGGTA TCTTTGACTT AGATCGCAAG AAAAAGCGCC TGGAAGAGAT CTCCATTCAG GCTGAAAATC CCGCACTCTG GGAAAAACCT GCTGAAATGC AAAAGCTGAA CAAAGAAAAA GCCCTGCTTG AAAAAGCCGT GGGGGAATTC GACGCCTTTG CAAGTCGCTT GAGCGACTCC AAGGTTCTGC TGGAAATGGC CGAAGAAGCC CAGGATGAAG GCAGTTTCTC TGAAGCCAAA GCCGAGGTCG TGGCACTGGA AAAGTTGGGG GAAGAGCTTG AGTTGAAACG AGTTCTGAAC GGCGAATTGG ACAGCAACAG CTCGTATCTG TCCATCAACT CCGGGGCAGG TGGTACGGAG TCCTGTGACT GGGCCTCCAT GCTTTTGCGT ATGTACACGC GTTATGCTGA CAAGCATGGC TTTAAAGTTC AAATCATCGA GATGACCGAG GGCGAGGGTG CCGGGATTAA ATCCTGCACG CTTTTGATCG AAGGCCCTTA TGCCTATGGA TATCTGAAGG CGGAATCCGG AGTGCATCGT CTGGTGCGTA TTTCTCCGTT TGATTCCAAT GCCCGTCGCC ATACATCTTT TGCGTCCGTG TTTGCCTGGG CGGAAGTGGA TGATGACATC AATATCGAAG TTCGTCCTGA TGATCTGAAA GTGGACACCT TCCGCGCCAG CGGGGCCGGT GGCCAGCACG TCAACAGAAC GGATTCTGCG GTTCGTATGA CTCACATTCC ATCCGGGGTT ATTGTGACCT GTCAGGTGGA AAGATCTCAG ATTCAGAACC GTGAAAAAGC CCTGAAGATG TTGAAAGCGC GCCTTTATGA AATGGAAATC GAAAAGCGCA ACGCGGAAAA AGACGCGATG AATTCCCAGA AAAAAGCCAA TGAATGGGGT TCGCAGATTC GCTCTTACGT GATGCATCCT TATCAGATGG TGAAAGATCA CCGCACTGAT TTTGAAACCA ATCAGGTCGA TGACGTGATG GACGGGGATC TGGATGGATT TATCATGTCT TACTTGAAAT CGACTTTGAC GGCAGAAAGT CAGCCTTCGT GA

Product

ProductprfB
DescriptionBacterial release factor 2
Modifications84..86:ribosomal_frameshift
MSIVTEASEI KSKIVSLEAF SKELRGYLDL DRKKKRLEEI SIQAENPALW EKPAEMQKLN KEKALLEKAV GEFDAFASRL SDSKVLLEMA EEAQDEGSFS EAKAEVVALE KLGEELELKR VLNGELDSNS SYLSINSGAG GTESCDWASM LLRMYTRYAD KHGFKVQIIE MTEGEGAGIK SCTLLIEGPY AYGYLKAESG VHRLVRISPF DSNARRHTSF ASVFAWAEVD DDINIEVRPD DLKVDTFRAS GAGGQHVNRT DSAVRMTHIP SGVIVTCQVE RSQIQNREKA LKMLKARLYE MEIEKRNAEK DAMNSQKKAN EWGSQIRSYV MHPYQMVKDH RTDFETNQVD DVMDGDLDGF IMSYLKSTLT AESQPS

Publication