Recode v. 2.0 / Database of translational recoding events.
Details for "r200633"
| Accession number | r200633 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Desulfitobacterium hafniense Y51 [details] |
Sequence
| Variant | Y51 |
| GenBank IDs | NC_007907.1 |
| Sequence | DNA of 1108 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 70) |
| Description | RF2 ORF0: 0.0011 ORF1: 9.9e-232 |
GTGATATTTG AATGGAAAAA AGAGTTGGAA AGTTTAGAAG TGCGCTTAGC AGATTTGAGG GTTTCACTTT
GACGTCCCTC AGCGTGAGGA TAAAATCAGT ATTTTAGAGA TTGAACTGCA AAGGCCGGAC TTTTGGGATA
ATCCAGAAGG GGCGCAAAAA GTGATGCAGG AGCTTTCTTA TCAACAGGAG AAAGTCAAAA CCTATTACAC
CTTGCAGCAG CAGCTGGATG ATCTGCTCAC CCTCTATCAA ATGGCGGTGG AAGAAAAGGA TGAATCCCTG
GAGCCTGAAC TTGAGGAAGG AATCCTGGCT CTGCAGCAAC GGCTGGATGG TTTGGAACTG GAGATTCTGC
TCAGCGGTCC CTATGATCGG AATAATGCCA TAGTTACCCT GCATGCGGGA GCCGGCGGCA CAGAAGCCCA
GGACTGGGTA TCCATGCTGT ATCGGATGTA TATCCGCTAT GGAGAACGCC ACGGTTATAA AGTGGAAACC
ATGGATTTCC TGCCCGGCGA TGAAGCGGGG ATTAAGAGTG CGACCCTATC CTTTGCGGGA GAAAATGCCT
TCGGCTATTT GAAAGCGGAG AAAGGGGTTC ACCGTTTAGT GCGGATATCT CCCTTTGACG CTTCGGGACG
CCGTCATACC TCTTTTGCCT CTGTGGATGT TATACCTGAG GTGATGGAGG ATAATGCTGA AATTCAGATT
CCGCCCGAAG ATCTCAAGGT GGATACCTAC CGGGCCAGCG GTGCGGGGGG ACAGCATGTC AATAAGACCA
GTTCTGCGGT CCGGATCACT CACTTACCCA CGGGGATTGT GGTCCAGTCC CAAAGTGAGC GTTCTCAGAT
TCAGAACAGG GCCTACTGCT TGCGCATCCT GCAAGCCAAG CTCCTGGAGC TGAAGCGCAA ACAGCAGGAA
GATGAAATTT CGGAGATTCG CGGAGAACAA CAGGAGATCG CGTGGGGGAG CCAGATTCGT TCCTATGTGT
TCCATCCTTA TAATATGGTT AAGGATCACC GGACCAATGA GGAAACAGCG AATACCGGAG CTGTCATGGA
CGGAGAGATT GACCAGTTTA TCGCTGCTTA TCTGCAAAAG ACCAAAGCTG TTCAGTAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 69..71:ribosomal_frameshift |
VIFEWKKELE SLEVRLADLR VSLDVPQRED KISILEIELQ RPDFWDNPEG AQKVMQELSY QQEKVKTYYT
LQQQLDDLLT LYQMAVEEKD ESLEPELEEG ILALQQRLDG LELEILLSGP YDRNNAIVTL HAGAGGTEAQ
DWVSMLYRMY IRYGERHGYK VETMDFLPGD EAGIKSATLS FAGENAFGYL KAEKGVHRLV RISPFDASGR
RHTSFASVDV IPEVMEDNAE IQIPPEDLKV DTYRASGAGG QHVNKTSSAV RITHLPTGIV VQSQSERSQI
QNRAYCLRIL QAKLLELKRK QQEDEISEIR GEQQEIAWGS QIRSYVFHPY NMVKDHRTNE ETANTGAVMD
GEIDQFIAAY LQKTKAVQ
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]