Recode v. 2.0 / Database of translational recoding events.
Details for "r200651"
| Accession number | r200651 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Geobacillus kaustophilus HTA426 [details] |
Sequence
| Variant | HTA426 |
| GenBank IDs | NC_006510.1 |
| Sequence | DNA of 1105 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 76) |
| Description | RF2 ORF0: 1.9e-08 ORF1: 1.9e-269 |
ATGATCGATT TGGTGGAAAT CAAGCAAGAG CTTGAGAAAA TGGCTAAGCG ATTAGCGGAA ATCAGGGGGT
CTCTTTGACC TCGAAGCGAA GCAGGCGCGC ATTCGCGAAT TAGAAGAGCA AATGGCCGCG CCAAACTTTT
GGGATGATCA AAAATCGGCG CAGGCGGTCA TTTCCGAAGC GAATGCGCTC AAAGATCTCG TCGAGGAATT
TTCCTCGCTT GAAGAACGGT TTGACAACTT GGAAGTGACG TACGAATTGC TCAAGGAAGA GCCGGATGAC
GAGCTCCAAG CTGAACTCGT CGAGGAAGCG AAAAAGCTGA TGAAAGACTT CAGCGAGTTC GAGCTGCAGC
TGCTGCTCAA CGAACCGTAC GACCAAAACA ACGCCATTTT GGAACTCCAT CCCGGCGCAG GCGGCACCGA
GTCGCAAGAC TGGGCGTCGA TGCTTTTGCG CATGTATACG CGCTGGGCGG AGAAAAAAGG GTTTAAAGTG
GAGACGCTCG ATTACCTGCC GGGCGAGGAA GCCGGGATTA AAAGCGTCAC GCTGCTCATT AAAGGGCACA
ACGCCTACGG CTATTTAAAA GCGGAAAAAG GGGTGCATCG GCTGGTTCGC ATCTCGCCGT TTGACGCCTC
AGGCCGCCGC CATACGTCGT TCGTGTCGTG CGAGGTTGTG CCGGAATTGG ATGATAACAT TGAAATTGAG
ATCCGGCCGG AAGAGCTGAA AATCGACACG TACCGCTCAA GCGGCGCGGG CGGGCAGCAC GTCAACACGA
CCGACTCGGC CGTGCGCATC ACCCACTTGC CGACCGGGAT CGTCGTCACG TGCCAATCGG AGCGGTCGCA
AATCAAAAAT CGCGAAAAAG CGATGAATAT GTTGAAGGCG AAATTGTACC AAAAGAAACT CGAGGAGCAG
CAAGCCGAAC TCGCTGAGCT GCGCGGCGAG CAAAAAGAAA TCGGCTGGGG CAACCAAATT CGTTCGTACG
TCTTCCATCC GTATTCGCTT GTCAAAGACC ATCGGACGAA CGTCGAGGTC GGCAATGTGC AAGCGGTGAT
GGATGGGGAA ATTGATGTGT TTATTGACGC GTATTTGCGT GCGAAGTTGA AGTAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 75..77:ribosomal_frameshift |
MIDLVEIKQE LEKMAKRLAE IRGSLDLEAK QARIRELEEQ MAAPNFWDDQ KSAQAVISEA NALKDLVEEF
SSLEERFDNL EVTYELLKEE PDDELQAELV EEAKKLMKDF SEFELQLLLN EPYDQNNAIL ELHPGAGGTE
SQDWASMLLR MYTRWAEKKG FKVETLDYLP GEEAGIKSVT LLIKGHNAYG YLKAEKGVHR LVRISPFDAS
GRRHTSFVSC EVVPELDDNI EIEIRPEELK IDTYRSSGAG GQHVNTTDSA VRITHLPTGI VVTCQSERSQ
IKNREKAMNM LKAKLYQKKL EEQQAELAEL RGEQKEIGWG NQIRSYVFHP YSLVKDHRTN VEVGNVQAVM
DGEIDVFIDA YLRAKLK
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]