Recode v. 2.0 / Database of translational recoding events.
Details for "r200660"
| Accession number | r200660 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Idiomarina loihiensis L2TR [details] |
Sequence
| Variant | L2TR |
| GenBank IDs | NC_006512.1 |
| Sequence | DNA of 1099 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 76) |
| Description | RF2 ORF0: 6.5e-08 ORF1: 1.1e-269 |
ATGTTTGAAA CTAACGCAAC CTACAACAAC ATCAAAGAAA TGCGTGAGCG TAGTAATTCG CTTAGGGGGT
ATCTTTGACT ACGATGCTAA GTTAGAGCGT CTGGAAGAAG TTACTCGTGA GATGGAACAG CCCAATGTGT
GGGATGATCC ACCCAAGGCG CAAGCTTTAG GTAAAGAGCG TGCGGCATTA GAGCAAGTGG TACAAACCCT
GGATAAACTT CAGCAGGGGC TGGATGATGT CGAGGGTCTT GTTGATCTTG CGGTAGAAGC AGAAGACGAA
GACACTTTTA ACGAAGCTCA TGAAGAGCTG TCCGGTTTAG TGAAACAGCT GGAAGCTTTA GAGTTTCGTC
GTATGTTTTC AAAAGACAAC GACTCGGCAG ACTGCTACCT GGATATTCAG TCAGGCTCCG GCGGAACCGA
AGCTCAGGAC TGGGCTAATA TGTTGCTACG CATGTATTTG CGCTGGGCAG AAGCGCATGA CTTTAAAGCG
GAAATTACTG AGCTGTCAGA AGGCGATGTC GCTGGTATAA AATCGGCCAC GGTACGTGTG GTCGGAGAAT
ACGCCTACGG CTGGCTGCGT ACTGAAACCG GTGTGCACCG TTTAGTACGT AAATCCCCCT TCGACTCAGG
TAATCGCCGC CATACATCGT TCGCGTCGGT TTTTGTTTAC CCGGAAGTAG ATGACGACAT TGATATTGAG
ATTGATCCGT CTGACCTGCG GGTGGATACC TATCGGGCAT CGGGTGCCGG TGGTCAGCAC GTTAACCGTA
CCGATTCTGC GGTTCGTTTA ACGCACGAAC CAACAGGCAT TGTGGTGCAA TGTCAGAGTG ACCGTTCGCA
GCACAAGAAC CGCGACTCAG CAATGAAACA GCTGAAAGCG AAATTGTACG AATTTGAATT ACAGAAACAG
AACGAAGAGA AACAGGCATT AGAAGACTCA AAAGCTGATA TCGGCTGGGG CAGTCAAATT CGCTCTTATG
TTCTGGACGA TGCGCGTATC AAAGATTTAC GTACGGGTAT CGAAAACCGT AATACCCAGG CTGTGCTTGA
TGGCGCACTT GACCCGTTTA TTGAAGCCAG CTTGAAAAGC GGGCTGTAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 75..77:ribosomal_frameshift |
MFETNATYNN IKEMRERSNS LRGYLDYDAK LERLEEVTRE MEQPNVWDDP PKAQALGKER AALEQVVQTL
DKLQQGLDDV EGLVDLAVEA EDEDTFNEAH EELSGLVKQL EALEFRRMFS KDNDSADCYL DIQSGSGGTE
AQDWANMLLR MYLRWAEAHD FKAEITELSE GDVAGIKSAT VRVVGEYAYG WLRTETGVHR LVRKSPFDSG
NRRHTSFASV FVYPEVDDDI DIEIDPSDLR VDTYRASGAG GQHVNRTDSA VRLTHEPTGI VVQCQSDRSQ
HKNRDSAMKQ LKAKLYEFEL QKQNEEKQAL EDSKADIGWG SQIRSYVLDD ARIKDLRTGI ENRNTQAVLD
GALDPFIEAS LKSGL
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]