Recode v. 2.0 / Database of translational recoding events.
Details for "r200661"
| Accession number | r200661 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Lactobacillus acidophilus NCFM [details] |
Sequence
| Variant | NCFM |
| GenBank IDs | NC_006814.3 |
| Sequence | DNA of 1117 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 73) |
| Description | RF2 ORF0: 1.5e-09 ORF1: 3e-238 |
ATGGAAATTA GTGAAATTCA AAATGTATTA GATGAGTTGA AGAAACGTTT AGACCACTTT AGGGGGTCTC
TTTGACTTAG ATGGTATTAA TGAAAGTATT GAAATAAATG AAGCTAAAAT GGCTCAGCCA GATTTTTGGG
ATAATCAAGA AAAAGCTCAA AAACTAATTA GTGAAAACAA TGTTTTAAAG GAAAAAAGAG ACTCATTCTT
AAAATTAAGC GAAGATTATG AAAATGAGTT AACTGCACTC GATTTGCTGC GTGAAGAGCC AGATTCAGAT
TTACAAACAG AAGTTGAAAC AGATTTAATA GCTTTACAGG AAGCTTTTCA TAATTATGAA TTAGATTTAC
TTTTGTCTGG CAAATATGAT AGTCATAACG CATTATTTGA AATACATCCT GGTGCAGGTG GTACTGAAGC
AATGGACTGG GGACAAATGC TCCTTAGAAT GTATCAGCGC TATTGTGATA CAGCAGGTTT TAAATTTGAA
ATAAATGATT ATGAACCAGG AGAAGAAGCA GGAGTAAAAA GTGTTACTGC TAGAGTAGTC GGCCATAATG
CTTATGGAAT GCTAAAGTCG GAAAATGGTG TTCATCGCTT GGTTAGAATT TCACCATTTG ACTCTGCCAA
GAGACGGCAT ACTTCTTTTG CATCAGTTGA AGTAATTCCG GAGATTGATG ATAGTATCAA AATTGATATC
GATCCTAAGG ATTTAAGAAT CGATGTATAT CGGTCAAGTG GTGCAGGTGG ACAACACATT AATAAAACAT
CAAGTGCTGT AAGAATTACG CACTTACCGA CTGGAATAGT CACTACATCA CAGGCTCAAC GCTCACAGAT
TCAAAACCGT GAGACTGCAA TGAATGAGTT GCGGGCTAAG CTATTTCATT TAGAAGAAGA AAAAAAGCGC
AAGCAAAAGC AGGCTTTGAA AGGTGATCAA AAAGAAATTG GTTGGGGTTC ACAAATTAGA TCATATGTAT
TTCATCCGTA CAATTTAGTT AAAGACCTTA GAACTGGATA CGAAACAGCT GATACAACTG GTGTAATGGA
TGGGAAACTT CAACCATTTA TTTATTCGTA TTTGCAATGG TTGCTTAGTC AGGAAAATCC AGAATAG
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 72..74:ribosomal_frameshift |
MEISEIQNVL DELKKRLDHF RGSLDLDGIN ESIEINEAKM AQPDFWDNQE KAQKLISENN VLKEKRDSFL
KLSEDYENEL TALDLLREEP DSDLQTEVET DLIALQEAFH NYELDLLLSG KYDSHNALFE IHPGAGGTEA
MDWGQMLLRM YQRYCDTAGF KFEINDYEPG EEAGVKSVTA RVVGHNAYGM LKSENGVHRL VRISPFDSAK
RRHTSFASVE VIPEIDDSIK IDIDPKDLRI DVYRSSGAGG QHINKTSSAV RITHLPTGIV TTSQAQRSQI
QNRETAMNEL RAKLFHLEEE KKRKQKQALK GDQKEIGWGS QIRSYVFHPY NLVKDLRTGY ETADTTGVMD
GKLQPFIYSY LQWLLSQENP E
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]