Recode v. 2.0 / Database of translational recoding events.
Details for "r200664"
| Accession number | r200664 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Lactobacillus sakei subsp. sakei 23K [details] |
Sequence
| Variant | 23K |
| GenBank IDs | NC_007576.1 |
| Sequence | DNA of 1117 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 73) |
| Description | RF2 ORF0: 1.3e-05 ORF1: 4.5e-247 |
ATGGAATTAA GTGAAGCAAG ACATTTATTG AACGAAATTG AGAGTAAAAT AACGCAGTTC AGGGGGTCTC
TTTGACTTAG AAGGCCTGCA AGAAAGCATC GCACAAAATG AAGCACAGAT GGGCGATCCT GATTTTTGGA
ATGACCAACA ATCAGCGCAA CAATTAATTG ATCAAAATAA TGTGTTAAAG GAAAAGTATG ATTCTTTTAA
CCAATTACAG GCGCAGTTTG AAGAATTGAG TGTCACTTTA GAGTTATTAC AAGAAGAACC TGATGACGAG
CTACAGGCGA GCTTTGAAGC CGACTTAGAG CAGATTCAAA GTCAGATGCG CCAATATGAA TTGGGGCAAT
TATTATCAGG TGAATACGAC AGCAATAACG CAATCGTTGA ATTACATCCT GGTGCTGGCG GAACAGAATC
CCAAGACTGG GGTGCGATGT TATTACGAAT GTATCTACGT TGGGCAGATG CGCACGGTTT TACCGTAGAA
ACAGAGGACT ATCAAGCCGG TGAAGAAGCC GGGATTAAGA GTGTCACTTT GATGATCAAG GGCCATAATG
CCTACGGATT ATTGCGCTCT GAAAAAGGGG TCCATCGCTT AGTTCGTATT TCACCATTTG ATTCAGCCGG
TCGGCGCCAT ACATCATTTT GTTCTGTCGA TGTGATGCCT GAATTAGACG GGTCAATTGA TATCGAAGTT
CGCACAGAGG ACTTGCGGGT TGACGTTTTC CGTTCCAGTG GGGCTGGTGG CCAACATATC AATAAAACCT
CTTCAGCCGT CCGCTTAACC CATTTACCAA CGGGGATTGT CGTTAGTTCA CAAGCACAAC GATCACAGTT
GCAAAATAGA GAAACTGCGA TGAACATGTT GAAAGCCAAG TTATATCAAA AAGAACAAGA AGAACAGGCC
AAAAAAGCAG CCGCTATCAA GGGTGAACAA CTCGAAATTG GCTGGGGTTC ACAAATTAGA TCGTATGTTT
TCCACCCCTA TACGATGGTT AAAGATCACC GGACTAATTA CGAAACAGGT AACGGTCAAG CCGTCATGGA
CGGTGATTTA GATCCCTTTA TGTATGCGTA CTTACAATGG CAATTGAGCC AAAAAAATCC GAATTAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 72..74:ribosomal_frameshift |
MELSEARHLL NEIESKITQF RGSLDLEGLQ ESIAQNEAQM GDPDFWNDQQ SAQQLIDQNN VLKEKYDSFN
QLQAQFEELS VTLELLQEEP DDELQASFEA DLEQIQSQMR QYELGQLLSG EYDSNNAIVE LHPGAGGTES
QDWGAMLLRM YLRWADAHGF TVETEDYQAG EEAGIKSVTL MIKGHNAYGL LRSEKGVHRL VRISPFDSAG
RRHTSFCSVD VMPELDGSID IEVRTEDLRV DVFRSSGAGG QHINKTSSAV RLTHLPTGIV VSSQAQRSQL
QNRETAMNML KAKLYQKEQE EQAKKAAAIK GEQLEIGWGS QIRSYVFHPY TMVKDHRTNY ETGNGQAVMD
GDLDPFMYAY LQWQLSQKNP N
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]