Recode v. 2.0 / Database of translational recoding events.
Details for "r200665"
| Accession number | r200665 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Lactobacillus phage Sal3 [details] |
Sequence
| GenBank IDs | NC_007929.1 |
| Sequence | DNA of 1132 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 85) |
| Description | RF2 ORF0: 7.1e-07 ORF1: 8e-242 |
ATGATTTTGA ACTTAGAATT AAGTGAATAT AAGAAAAATA TTGCTGAGAT GAGTAATAAA GTTAGTGAAT
TTAGGAGGTC TCTTTGACTT AGATGCTTTA GAAGAAAAGA TTGCAGAAAA TGAAGCAAGG ATGGCAGAGC
CAGGATTTTG GGACGATCAA GAAAAAGCAC AAGAGGTTAT TGCTGAAAAT AATGATTTAA AGGCAAAATT
TGAGACATTT CATGAACTAG CGGAATCTAT TTCAGATTTA GGAGTATCGT TAGAGTTATT ACAAGAAATT
CCAGATGATG AGGAATTACA AGCAGATTTA GAAGAAAATT ATCAACATGC TGAAAAATTG TTACAATCAT
ATCAATTAAA TATGTTGTTA AGTGAAAAGT ATGATAAGAA TAATGCTATT TTAGAAATTC ATCCTGGAGC
AGGTGGCACA GAATCTCAAG ATTGGGGATC AATGTTACTA AGAATGTATA CACGCTGGGC TAGTCAACAC
GATTTTAAAG TTGAAACTGT AGATTATCAA CCAGGCGATG ATGCTGGTAT AAAAAGTGTA ACGCTTATGA
TAGAAGGAAA AAATGCTTAT GGTTATCTAC GAAGTGAACG AGGAGTTCAT AGATTAGTAC GTATTTCACC
ATTTGATTCT GCCGGAAGAC GTCATACCTC ATTTGCATCT GTTAATGTTA TGCCAGAACT TGATGATTCT
GTTGAAGTTG AGTTAAGACC TGAAGATATA AAAATGGAAG TCTTTCGTGC TAGTGGAGCA GGTGGACAGC
ATATTAATAA AACTTCTTCA GCTGTTAGAC TTATTCATAT ACCAACGGGA ATAGTTGTTT CAAGCCAGGC
ACAACGTTCT CAATTTCAAA ATAGAGCAAC TGCAGAAAAT ATGTTACGTG CTAAGTTATA TCAATTGGAG
ATGGAAGAAA AAGAAAAGCA ACGTGCTGCT ATTCAAGGAG AACAATTAGA TATTGGTTGG GGTTCCCAGA
TTAGATCATA TGTCTTCCAT CCATACTCAA TGGTCAAAGA TCATCGCACT GATTATGAAA CTGGAAATAT
TCAAGCAGTT ATGGATGGAG ATTTAGATCC ATTTATCAAT GCTTATTTAC AATGGAAGCT GCAACAAGCG
AATCCACAAT AA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 84..86:ribosomal_frameshift |
MILNLELSEY KKNIAEMSNK VSEFRRSLDL DALEEKIAEN EARMAEPGFW DDQEKAQEVI AENNDLKAKF
ETFHELAESI SDLGVSLELL QEIPDDEELQ ADLEENYQHA EKLLQSYQLN MLLSEKYDKN NAILEIHPGA
GGTESQDWGS MLLRMYTRWA SQHDFKVETV DYQPGDDAGI KSVTLMIEGK NAYGYLRSER GVHRLVRISP
FDSAGRRHTS FASVNVMPEL DDSVEVELRP EDIKMEVFRA SGAGGQHINK TSSAVRLIHI PTGIVVSSQA
QRSQFQNRAT AENMLRAKLY QLEMEEKEKQ RAAIQGEQLD IGWGSQIRSY VFHPYSMVKD HRTDYETGNI
QAVMDGDLDP FINAYLQWKL QQANPQ
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]