Recode v. 2.0 / Database of translational recoding events.
Details for "r200667"
| Accession number | r200667 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Legionella pneumophila str. Lens [details] |
Sequence
| Variant | Lens |
| GenBank IDs | NC_006369.1 |
| Sequence | DNA of 1108 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 76) |
| Description | RF2 ORF0: 1.5e-07 ORF1: 3.3e-271 |
ATGCTGGAAG TGAATCAAAT TAATTTAAGT TTAATCGATC TTAATGAGCG CATAGAATCG CTTAGGGGGT
ATCTTTGACT TCGAAGGTAA AAGTGAGCGC TTGGAAGAAG TAATTCGCGA ATTGGAGTCA TCCAATGTGT
GGGACAATCC GGAACAGGCT CAGGCATTGG GACGTGAAAG AACTCAGCTG GAAACTATAG TCCACTCATT
AAGCCAATTA AGCCAATCAA TAAGTGATCA GAGTGAACTG TTTGAATTGG CTCGGGAAGA AGATGATGAG
CAAACCATCA ACGACATTGG TGAGGAATTA AAATCAATTG AGCAACAAGT CGCCAGTTTG GAATTTAGAA
GAATGTTTTC TGGCAAAATG GACCACTCCA ATGCTTATCT TGATATTCAA GCAGGTTCTG GTGGAACTGA
AGCGCAAGAT TGGGCTGAAA TGCTATTACG AATGTATTTA CGTTGGGGAG AACATCACGG ATTTACCACC
GAATTGATAG AATGCTCTCC CGGTGAAGTG GCAGGAATTA AAAGTGCGAC TATTCATTTT ACAGGTGAAT
ATGCGTTTGG TTGGTTAAGG ACTGAAACGG GTGTCCATCG TTTAGTGAGA AAGTCGCCAT TTGATTCTGG
CAACAGGAGA CATACTTCGT TTGCAGCTGT TTTTGTCTCT CCTGAAATTG ACGATGATAT CGAAATTGAA
ATTAATCCAG CTGATTTGCG GATTGATACT TACAGAGCTT CCGGGGCTGG CGGGCAGCAT GTTAACCGTA
CTGATTCTGC CGTAAGGATT ACACATATCC CTAGTGGGAT AGTCGTTCAA TGTCAGAATG ATCGAAGCCA
GCATAAAAAC AAAGACCAGG CAATGAAGCA ATTGAGGGCG AAGCTTTATG AGTTGGAAAT GCAAAAGAAA
AATGCAGAGC AGCAAGCATT GGAAGCTAGC AAATCTGACA TTGGTTGGGG ATCACAAATT CGCTCTTATG
TATTAGACCA ATCTCGTATA AAAGATTTGC GCACCGGTGT TGAAACCAGT AATACTCAGG CAGTATTGGA
TGGTTCATTA GATCAATTTA TTGAAGCCAG TTTAAAGGCA GGAGTAGGGC AAGCATGA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 75..77:ribosomal_frameshift |
MLEVNQINLS LIDLNERIES LRGYLDFEGK SERLEEVIRE LESSNVWDNP EQAQALGRER TQLETIVHSL
SQLSQSISDQ SELFELAREE DDEQTINDIG EELKSIEQQV ASLEFRRMFS GKMDHSNAYL DIQAGSGGTE
AQDWAEMLLR MYLRWGEHHG FTTELIECSP GEVAGIKSAT IHFTGEYAFG WLRTETGVHR LVRKSPFDSG
NRRHTSFAAV FVSPEIDDDI EIEINPADLR IDTYRASGAG GQHVNRTDSA VRITHIPSGI VVQCQNDRSQ
HKNKDQAMKQ LRAKLYELEM QKKNAEQQAL EASKSDIGWG SQIRSYVLDQ SRIKDLRTGV ETSNTQAVLD
GSLDQFIEAS LKAGVGQA
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]