Recode v. 2.0 / Database of translational recoding events.
Details for "r200669"
| Accession number | r200669 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 [details] |
Sequence
| Variant | Philadelphia 1 |
| GenBank IDs | NC_002942.5 |
| Sequence | DNA of 1108 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 76) |
| Description | RF2 ORF0: 1.5e-07 ORF1: 4.1e-271 |
ATGCTAGAAG TGAATCAAAT TAATTTAAGT TTAATCGATC TTAATGAGCG CATAGAATCG CTTAGGGGGT
ATCTTTGACT TCGAAGGTAA AAGTGAGCGC TTGGAAGAAG TAATTCGCGA ATTGGAATCA TCCAATGTGT
GGGACAATCC GGAACAGGCT CAGGCATTGG GACGTGAAAG AACTCAGCTG GAAACTATAG TCCACTCATT
AAGCCAATTA AGCCAATCAA TTAGTGATCA GAGGGAACTG TTTGAATTGG CTCGAGAAGA AGATGATGAG
CAAACCATCA ACGACATTGG TGAGGAATTA AAATCAATTG AGCAACAAGT CGCCAGTTTG GAATTTAGAA
GAATGTTTTC TGGCAAAATG GACCACTCCA ATGCTTATCT TGATATTCAA GCAGGTTCTG GCGGCACTGA
AGCGCAAGAT TGGGCTGAAA TGTTATTACG AATGTATTTA CGTTGGGGAG AACATCACGG ATTTACCACC
GAGTTGATAG AATGCTCTCC TGGTGAAGTG GCAGGAATTA AAAGTGCGAC TATTCATTTT ACAGGTGAAT
ATGCGTTTGG TTGGTTAAGG ACTGAAACAG GTGTCCATCG TTTAGTGAGA AAGTCGCCAT TTGACTCTGG
CAACAGGAGA CACACTTCGT TTGCAGCTGT TTTCGTCTCT CCTGAAATTG ACGATGATAT CGAAATTGAA
ATTAATCCAG CTGATTTGCG GATTGATACT TACAGAGCTT CCGGGGCTGG TGGGCAGCAT GTTAACCGTA
CTGATTCTGC CGTAAGAATT ACACATATCC CTAGTGGGAT AGTCGTTCAG TGCCAGAATG ATCGAAGCCA
GCATAAAAAT AAAGACCAGG CAATGAAGCA ATTGAGGGCA AAGCTTTATG AGTTGGAAAT GCAAAAGAAA
AATGCGGAAC AGCAAGCATT GGAAGCTAGC AAATCTGACA TTGGTTGGGG ATCACAAATT CGTTCTTACG
TATTAGACCA ATCTCGTATA AAAGATTTGC GCACCGGTGT TGAAACCAGT AATACTCAGG CAGTATTGGA
TGGTTCATTA GATCAATTTA TTGAAGCCAG TTTAAAGGCA GGAGTAGGGC AAGCATGA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 75..77:ribosomal_frameshift |
MLEVNQINLS LIDLNERIES LRGYLDFEGK SERLEEVIRE LESSNVWDNP EQAQALGRER TQLETIVHSL
SQLSQSISDQ RELFELAREE DDEQTINDIG EELKSIEQQV ASLEFRRMFS GKMDHSNAYL DIQAGSGGTE
AQDWAEMLLR MYLRWGEHHG FTTELIECSP GEVAGIKSAT IHFTGEYAFG WLRTETGVHR LVRKSPFDSG
NRRHTSFAAV FVSPEIDDDI EIEINPADLR IDTYRASGAG GQHVNRTDSA VRITHIPSGI VVQCQNDRSQ
HKNKDQAMKQ LRAKLYELEM QKKNAEQQAL EASKSDIGWG SQIRSYVLDQ SRIKDLRTGV ETSNTQAVLD
GSLDQFIEAS LKAGVGQA
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]