Recode v. 2.0 / Database of translational recoding events.
Details for "r200670"
| Accession number | r200670 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Listeria innocua Clip11262 [details] |
Sequence
| Variant | Clip11262 |
| GenBank IDs | NC_003212.1 |
| Sequence | DNA of 1102 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 73) |
| Description | RF2 ORF0: 4.1e-07 ORF1: 6e-260 |
ATGGAATTAG CAGAAATTCG TAATGAACTA GAAAAAACAG CGCAGCAAAT CAAAGACTTT AGGGGGTCTC
TTTGACTTAG ACAGCATGGA AGTTCGAATT GCTGAGTTAG AAGACCAGAT GTTGGATCCG AATTTTTGGA
ACGACCAACA AGCGGCTCAA AAAGTAATTA ATGAATCAAA TGGATACAAA GAAACGTATC AAGCTTTTCA
TGCGCTTGAA GAAGAACAAG AAAGCATGGA AATCAGTTTA GAACTACTAA AAGAAGAAGC AGATGAAGAT
TTACAAGCAG AATTAGAAAA AGATATTAAA GCATATGTGG CGACGATAAG TGAATTTGAA CTTAAGTTAA
TGTTAAGTGA TCCATATGAT AAAAATAATG CTATTTTAGA ATTGCATCCA GGTGCTGGTG GAACAGAATC
ACAAGACTGG GGCTCAATGT TATTACGCAT GTATCAACGT TGGTCTGAGA AAAAAGGTTT TAAAGTCGAA
ATGCTCGATT ATCAAGCGGG TGATGAAGCG GGTATTAAAA GCGTTACATT ACTCATCAAA GGGCACAATG
CATACGGCTA TTTGAAAGCA GAAAAAGGTG TGCATCGTTT AGTTCGTATC TCTCCATTCG ATTCATCAGG
TAGACGTCAT ACATCTTTTG TTTCAGTGGA TGTTATGCCA GAATTAGATG ATGAAATTGA AATCGAAGTA
CGTACAGAAG ATTTGAAAAT TGATACGTAT CGTGCAACTG GTGCTGGCGG ACAGCATATT AATACAACCG
ATTCAGCAGT TCGGATGACA CATATTCCAT CCGGGATTGT AGTAACCTGC CAATCAGAAC GTTCGCAGCT
TAAAAACCGT GAACAAGCAA TGAAAATGTT GAAAACAAAA CTATATCAAA AAGAACAAGA AGAAAAAGAA
CGCGAGCTAG CAGAAATTCG TGGTGAGCAA AAAGAAATTG GTTGGGGAAG CCAAATTCGT TCGTATGTTT
TCCACCCTTA CTCCATGGTG AAAGACCATC GTACAAATTA CGAAACCGGT AATATTCAAG CGGTAATGGA
TGGAGATTTA GACGACTTTA TCAATGCATA TTTGCGTTCT AGGATTGGAT AA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 72..74:ribosomal_frameshift |
MELAEIRNEL EKTAQQIKDF RGSLDLDSME VRIAELEDQM LDPNFWNDQQ AAQKVINESN GYKETYQAFH
ALEEEQESME ISLELLKEEA DEDLQAELEK DIKAYVATIS EFELKLMLSD PYDKNNAILE LHPGAGGTES
QDWGSMLLRM YQRWSEKKGF KVEMLDYQAG DEAGIKSVTL LIKGHNAYGY LKAEKGVHRL VRISPFDSSG
RRHTSFVSVD VMPELDDEIE IEVRTEDLKI DTYRATGAGG QHINTTDSAV RMTHIPSGIV VTCQSERSQL
KNREQAMKML KTKLYQKEQE EKERELAEIR GEQKEIGWGS QIRSYVFHPY SMVKDHRTNY ETGNIQAVMD
GDLDDFINAY LRSRIG
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]