Recode v. 2.0 / Database of translational recoding events.
Details for "r200671"
| Accession number | r200671 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Listeria monocytogenes EGD-e [details] |
Sequence
| Variant | EGD-e |
| GenBank IDs | NC_003210.1 |
| Sequence | DNA of 1102 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 73) |
| Description | RF2 ORF0: 4.1e-07 ORF1: 7.4e-258 |
ATGGAATTAG CAGAAATTCG TAATGAACTA GAGAAAACAG CACAGCAAAT CAAAGACTTT AGGGGGTCTC
TTTGACTTAG ACAGCATGGA AGTTCGAATT GCTGAGTTAG AAGACCAAAT GTTGGATCCG AATTTTTGGA
ACGACCAACA AGCAGCGCAA AAAGTAATCA ATGAATCCAA TGGATATAAA GAAACATACC AAGCGTTCCA
TGCGCTAGAA GAAGAACAAG AAAGCATGGA AATTAGTCTG GAACTGTTAA AAGAAGAAGC GGATGAAGAT
TTACAAGAAG AATTAGAAAA AGATATTAAA GCTTACATGG CGACTATTAG TGCATTTGAA TTAAAACTGA
TGCTAAGTGA CCCATATGAC AAAAATAATG CTATTTTAGA ACTTCATCCA GGTGCTGGTG GTACAGAATC
ACAAGACTGG GGTTCGATGT TACTTCGTAT GTATCAACGT TGGTCTGAGA AAAAAGGCTT TAAAGTAGAG
ATGCTCGATT ACCAAGCAGG GGACGAAGCT GGAATAAAAA GTGTTACGCT ACTTATAAAA GGCCACAATG
CTTACGGCTA TTTAAAAGCG GAAAAAGGAG TACATCGTCT AGTGCGTATT TCACCATTTG ACTCATCTGG
CAGGCGTCAT ACATCATTCG TTTCCGTGGA TGTAATGCCT GAATTAGATG GCGATATTGA AATTGAAGTA
CGTACAGAAG ACTTGAAAAT TGATACGTAC CGCGCAACTG GTGCAGGTGG ACAACATATC AATACAACTG
ACTCAGCTGT TAGGATGACA CATATTCCAT CCGGCATCGT TGTAACGTGT CAATCAGAAC GGTCGCAGCT
TAAAAACCGT GAACAAGCAA TGAAAATGTT AAAAACAAAG CTGTATCAAA AAGAACAAGA AGAAAAAGAA
CGCGAGCTAG CAGAAATTCG TGGAGAACAA AAAGAAATTG GTTGGGGAAG CCAAATTCGT TCCTATGTTT
TCCACCCTTA CTCCATGGTG AAAGATCATC GCACAAATTA CGAAACCGGT AATATTCAAG CAGTAATGGA
TGGAGACTTA GATGACTTTA TCAATGCATA TTTGCGTTCT AGGATTGGAT AA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 72..74:ribosomal_frameshift |
MELAEIRNEL EKTAQQIKDF RGSLDLDSME VRIAELEDQM LDPNFWNDQQ AAQKVINESN GYKETYQAFH
ALEEEQESME ISLELLKEEA DEDLQEELEK DIKAYMATIS AFELKLMLSD PYDKNNAILE LHPGAGGTES
QDWGSMLLRM YQRWSEKKGF KVEMLDYQAG DEAGIKSVTL LIKGHNAYGY LKAEKGVHRL VRISPFDSSG
RRHTSFVSVD VMPELDGDIE IEVRTEDLKI DTYRATGAGG QHINTTDSAV RMTHIPSGIV VTCQSERSQL
KNREQAMKML KTKLYQKEQE EKERELAEIR GEQKEIGWGS QIRSYVFHPY SMVKDHRTNY ETGNIQAVMD
GDLDDFINAY LRSRIG
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]