Recode v. 2.0 / Database of translational recoding events.
Details for "r200672"
| Accession number | r200672 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Listeria monocytogenes str. 4b F2365 [details] |
Sequence
| Variant | 4b F2365 |
| GenBank IDs | NC_002973.6 |
| Sequence | DNA of 1102 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 73) |
| Description | RF2 ORF0: 4.1e-07 ORF1: 1.6e-260 |
ATGGAATTAG CAGAAATTCG TAATGAATTA GAAAAAACAG CGCAGCAAAT CAAAGACTTT AGGGGGTCTC
TTTGACTTAG ACAGTATGGA AGTTCGAATC GCTGAGCTAG AAGACCAAAT GTTAGATCCG AATTTTTGGA
ATGACCAACA AGCGGCACAG AAAGTAATTA ATGAGTCAAA CGGATATAAA GAAACATACC AAGCTTTTCA
TGCGCTAGAA GAAGAACAAG AAAGTATGGA AATTAGTCTA GAATTATTAA AAGAAGAAGC AGATGAAGAT
TTACAAGAAG AATTAGAAAA AGATATTAAA GCTTACATGG CGACTATTAG TGAGTTTGAA TTAAAACTGA
TGCTAAGTGA TCCATATGAC AAAAATAATG CTATTTTAGA ACTTCATCCA GGTGCTGGTG GTACAGAATC
ACAAGACTGG GGTTCGATGT TACTTCGTAT GTATCAACGT TGGTCTGAGA AGAAAGGCTT TAAAGTAGAG
ATGCTTGATT ACCAAGCAGG GGACGAAGCT GGAATAAAAA GTGTCACGTT ACTTATAAAA GGCCACAATG
CTTACGGCTA TTTAAAAGCG GAAAAAGGGG TGCATCGTCT AGTGCGTATT TCGCCATTTG ACTCATCCGG
CAGACGTCAT ACATCATTCG TTTCCGTGGA TGTAATGCCT GAATTAGATG ATGATATTGA AATTGAAGTA
CGTACAGAAG ACTTGAAAAT TGATACGTAC CGCGCAACTG GTGCAGGTGG ACAACATATC AATACAACTG
ACTCAGCTGT TAGGATGACA CATATTCCAT CCGGCATCGT TGTAACGTGC CAATCTGAGC GTTCTCAGCT
TAAAAACCGT GAACAGGCAA TGAAAATGTT AAAAACAAAA TTATACCAAA AAGAACAAGA GGAAAAAGAA
CGCGAGCTAG CAGAAATTCG AGGAGAACAA AAAGAAATTG GTTGGGGAAG CCAAATTCGT TCCTATGTTT
TCCACCCTTA CTCCATGGTG AAAGATCATC GCACAAATTA CGAAACCGGT AATATTCAAG CGGTAATGGA
TGGAGACTTA GATGAATTTA TCAATGCATA TTTGCGTTCT AGGATTGGAT AA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 72..74:ribosomal_frameshift |
MELAEIRNEL EKTAQQIKDF RGSLDLDSME VRIAELEDQM LDPNFWNDQQ AAQKVINESN GYKETYQAFH
ALEEEQESME ISLELLKEEA DEDLQEELEK DIKAYMATIS EFELKLMLSD PYDKNNAILE LHPGAGGTES
QDWGSMLLRM YQRWSEKKGF KVEMLDYQAG DEAGIKSVTL LIKGHNAYGY LKAEKGVHRL VRISPFDSSG
RRHTSFVSVD VMPELDDDIE IEVRTEDLKI DTYRATGAGG QHINTTDSAV RMTHIPSGIV VTCQSERSQL
KNREQAMKML KTKLYQKEQE EKERELAEIR GEQKEIGWGS QIRSYVFHPY SMVKDHRTNY ETGNIQAVMD
GDLDEFINAY LRSRIG
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]