Recode v. 2.0 / Database of translational recoding events.
Details for "r200673"
| Accession number | r200673 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Mannheimia succiniciproducens MBEL55E [details] |
Sequence
| Variant | MBEL55E |
| GenBank IDs | NC_006300.1 |
| Sequence | DNA of 1099 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 76) |
| Description | RF2 ORF0: 7.6e-10 ORF1: 1e-276 |
ATGTTTGAAA TTAATCCTGT AAAAAACAAA ATTGCAGACT TAGCCTCTCG CACTGACGTG CTGAGGGGGT
ATCTTTGACT TTGATGCGAA AGTAGAACGC CTGGAAGAAG TCAATGCCGA ATTGGAACAA CCTGACGTAT
GGAACGAACC GGAAAAAGCG CAGGCTTTAG GAAAAGAGCG TTCCGCATTG GAAACCGTTG TGAACACCAT
TAAAAAGCTC GATCAGGGGC TGGAAGACGT TGACGGACTA TTGGAATTAG CCGTTGAAGG AGAAGATGAA
GAAACCTTTA ACGAAGCCGT TACCGAATTA GACGAATTGG AACAGCAGTT GGCTAAATTG GAATTCCGCC
GGATGTTCAG CGGCGAGCAC GATGCCTGCG ACTGTTATAT CGATCTGCAA GCGGGTTCCG GCGGCACGGA
AGCGCAGGAC TGGACGGAAA TGCTGTTACG TATGTATTTG CGTTGGGCGG AAAGCAAAGG CTTTAAAACC
GAATTGATGG AAGTCTCCGA CGGCGATGTA GCCGGTTTAA AATCCGCTAC GGTGAAAGTA TCAGGCGAAT
ATGCGTTCGG CTGGCTACGC ACCGAAACGG GCATTCACCG TTTAGTGCGC AAAAGCCCGT TTGACAGCAA
TAACCGTCGT CACACCTCTT TTGCCGCCGC CTTTATTTAT CCTGAAATTG ACGATGATAT TGATATTGAG
ATCAATCCGG CAGATTTGCG TATCGACGTA TATCGCGCCT CCGGAGCCGG CGGGCAACAC GTAAACCGGA
CGGAAAGTGC GGTACGGATT ACCCATATTC CAAGCGGCAT TGTAGTGCAA TGTCAAAACG ATCGTTCTCA
GCATAAAAAT AAAGATCAAT GTATGAAGCA ATTGAAAGCG AAACTTTATG AAATGGAATT GCAAAAGAAA
AACGCAGATA AACAGGCGTT GGAAGATTCA AAATCGGATA TCGGCTGGGG CAGCCAGATT CGTTCCTATG
TGCTTGATGA TTCCCGCATC AAAGATCTGC GTACAGGCGT AGAAAACCGC AATACCCAAG CGGTATTGGA
CGGCGATCTA GATCGTTTTA TCGAAGCCAG TTTAAAAGCG GGATTGTAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 75..77:ribosomal_frameshift |
MFEINPVKNK IADLASRTDV LRGYLDFDAK VERLEEVNAE LEQPDVWNEP EKAQALGKER SALETVVNTI
KKLDQGLEDV DGLLELAVEG EDEETFNEAV TELDELEQQL AKLEFRRMFS GEHDACDCYI DLQAGSGGTE
AQDWTEMLLR MYLRWAESKG FKTELMEVSD GDVAGLKSAT VKVSGEYAFG WLRTETGIHR LVRKSPFDSN
NRRHTSFAAA FIYPEIDDDI DIEINPADLR IDVYRASGAG GQHVNRTESA VRITHIPSGI VVQCQNDRSQ
HKNKDQCMKQ LKAKLYEMEL QKKNADKQAL EDSKSDIGWG SQIRSYVLDD SRIKDLRTGV ENRNTQAVLD
GDLDRFIEAS LKAGL
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]