Recode v. 2.0 / Database of translational recoding events.
Details for "r200674"
| Accession number | r200674 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Mesorhizobium loti MAFF303099 [details] |
Sequence
| Variant | MAFF303099 |
| GenBank IDs | NC_002678.2 |
| Sequence | DNA of 1132 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 70) |
| Description | RF2 ORF0: 1.4e-06 ORF1: 4e-245 |
ATGCGCGCGG AAACGCAGAA TATTGTCGAC GAGATCAGGC AGGCGATAAC CCTGCTGAGG AGGCATCTTT
GACTGGGATC AGGCCATAAA GCGGCTTGAA TACCTGAATG TGCGGGCCGA GGACGCCAGC CTCTGGAACG
AACCGCTGGA AGCGCAGAAG CTGATGCGCG AGCGTCAGGG CCTCGAGGAA GGCATCGCGG CGGTCAAGGG
CCTGACCCAG GCGCTGGAAG ACAATATCGG CCTGATCGAG CTCGGCGAGG AAGAGGGCGA CGAGGGCGTC
ATCACCGAGG CCGAAGCGGC GATCCGCTCG ATGCAGGGCG AGGCCAAGGC CCGCCAGGTC GAAACGCTGC
TGTCGGGTGA AGCCGACGCC AACGACACCT ATCTCGAAAT CCATGCCGGC GCCGGCGGCA CCGAAAGCCA
GGACTGGGCC TCGATGCTTT TGCGCATGTA CACGCGCTGG GCCGAACGCC GCCGCTTCAA AGTCGAAGTG
CTGGAAGTGC ATGACGGCGA AGAGGCCGGC ATCAAGTCCG CGACGCTGAT GATCAAGGGC CACAATGCCT
ATGGCTGGCT GAAGACTGAA TCCGGCGTCC ATCGCCTGGT CCGCATTTCG CCCTATGACA GCAATGCGCG
CCGGCACACT TCCTTCGCCA GCGTCTGGGT CTATCCGGTC ATCGACGACA CGATCGAGAT CGATGTTTCA
GAATCGGACG TGCGCATCGA CACCTATCGC TCGTCGGGCT CTGGCGGCCA GCACGTCAAC ACCACCGATT
CGGCTGTGCG CATCACCCAT ATCGCCACCG GCATCGCGGT CGCCTGCCAG GCCGAGCGTT CGCAGCACAA
GAACCGGGCG AAGGCCTGGG AGATGCTGCG CTCGCGCCTT TACGAGGAAG AGCTGAAGAA GCGTGAGGCC
ATCGCCAACG CCACCGAAGC CTCGAAGAGC GACATCGGCT GGGGCCACCA GATCCGCTCC TACGTGCTGC
AGCCGTACCA GTTGGTGAAG GATCTGCGCA CCGGCGTCGA AAGCACCAGC CCGTCGAGCG TGCTCGATGG
CGACCTCGAC GACTTCATGG AAGCCTCGCT GTCGCAACGC ATCGAAGGCG GCGCAGGCGA GGCCGTGGCG
GATCTGGACT AG
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 69..71:ribosomal_frameshift |
MRAETQNIVD EIRQAITLLR RHLDWDQAIK RLEYLNVRAE DASLWNEPLE AQKLMRERQG LEEGIAAVKG
LTQALEDNIG LIELGEEEGD EGVITEAEAA IRSMQGEAKA RQVETLLSGE ADANDTYLEI HAGAGGTESQ
DWASMLLRMY TRWAERRRFK VEVLEVHDGE EAGIKSATLM IKGHNAYGWL KTESGVHRLV RISPYDSNAR
RHTSFASVWV YPVIDDTIEI DVSESDVRID TYRSSGSGGQ HVNTTDSAVR ITHIATGIAV ACQAERSQHK
NRAKAWEMLR SRLYEEELKK REAIANATEA SKSDIGWGHQ IRSYVLQPYQ LVKDLRTGVE STSPSSVLDG
DLDDFMEASL SQRIEGGAGE AVADLD
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]