Recode v. 2.0 / Database of translational recoding events.
Details for "r200675"
| Accession number | r200675 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Methylobacillus flagellatus KT [details] |
Sequence
| Variant | KT |
| GenBank IDs | NC_007947.1 |
| Sequence | DNA of 1105 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 82) |
| Description | RF2 ORF0: 8.4e-05 ORF1: 1.7e-262 |
ATGGAAGCGG AACAACTCAA TCTTATCGCC CACCGCCTGG ATGATCTTGC GGAGCGCCAC CAGGCCTTAC
GGGGGTATCT TTGACTTCGA TACCAAGCAG CAACGTCTGG AAGAGGTTTC TCAGCTTTTA GAAGACCCCA
ACATCTGGAA CGATAACGAA CGCTCTCAGA AGCTTGGCAA GGAAAGACGG GAGCTGGAGT TCGTTGTCAA
TTCGCTGACG GAAGTGGAGA ACGGCGTGCG CGACAGCCGC GAGCTGTTTG AGATGGCGCG CGAGGAAAAC
GATGACGACA CCCTGCGCAG CATTGATGCC GATACGCAGG CGCTGGAAAA AATCGTTGCG GAAATGGAGT
TCCGCCGCAT GTTTTCCCAT CCGATGGATC AGAACAATTG CTTCCTGGAT ATCCAGGCTG GCTCGGGCGG
TACCGAAGCG CAGGATTGGG CGTCCATGCT GCTGCGCATG TATTTGCGTT ATTGCGAGAA CAAGGGCTTC
AAGGTCGAAG TGTTGGAGGA GTCGGAAGGA GACGTGGCCG GGATCAAGAG TGCGTCCCTG AAAATCTCCG
GTGACTATGC CTATGGGTTC CTGCGTACCG AGAGCGGCGT GCATCGCCTG GTGCGCAAAT CGCCATTCGA
TTCCGGCAAC CGCCGGCATA CCTCGTTCGC GAGCGTGTTC GTCTACCCCG AGGTGGACGA TTCCATCGTG
GTGGAAATCA ATCCTGCTGA CTTGCGTATT GACACTTATC GCGCCTCGGG AGCGGGTGGT CAGCATATCA
ACAAGACCGA TTCCGCTGTC CGTATTACTC ACTTGCCGAC CAATACTGTC GTGCAGTGCC AGAATGACCG
CTCTCAGCAT CGCAACAAGG ATGAGGCGAT GAATATGCTG AAGGCGCAGT TGTATGCATT GGAACTCCGC
AAGCGCAACG AGGAAAAGCA AGCGATGGAA GATGCCAAGA CCGACATTGG TTGGGGGCAC CAGATTCGTT
CCTATGTGCT CGACCAATCC CGCATCAAGG ATTTGCGCAC CAATGTTGAG GTCGGCAACA CCCAGGGGGT
ACTCGATGGC GACCTGGATC CATTTATTTC TGAAAGTTTG AAGCAGGGAG TGTAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 81..83:ribosomal_frameshift |
MEAEQLNLIA HRLDDLAERH QALRGYLDFD TKQQRLEEVS QLLEDPNIWN DNERSQKLGK ERRELEFVVN
SLTEVENGVR DSRELFEMAR EENDDDTLRS IDADTQALEK IVAEMEFRRM FSHPMDQNNC FLDIQAGSGG
TEAQDWASML LRMYLRYCEN KGFKVEVLEE SEGDVAGIKS ASLKISGDYA YGFLRTESGV HRLVRKSPFD
SGNRRHTSFA SVFVYPEVDD SIVVEINPAD LRIDTYRASG AGGQHINKTD SAVRITHLPT NTVVQCQNDR
SQHRNKDEAM NMLKAQLYAL ELRKRNEEKQ AMEDAKTDIG WGHQIRSYVL DQSRIKDLRT NVEVGNTQGV
LDGDLDPFIS ESLKQGV
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]