Recode v. 2.0 / Database of translational recoding events.
Details for "r200676"
| Accession number | r200676 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Methylococcus capsulatus str. Bath [details] |
Sequence
| Variant | Bath |
| GenBank IDs | NC_002977.6 |
| Sequence | DNA of 1099 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 76) |
| Description | RF2 ORF0: 8e-09 ORF1: 7.2e-273 |
ATGCGCGAAC TCAATCCCCT CTACAATCAG ATCAAAGACC TGAAGAGCCG CCAGGATGCT CTTAGGGGGT
ATCTTTGACT TCGACACCAA ACAGGAACGC CTGACCGAAG TCCTGCGCGA ACTGGAAGAC CCAAGAATCT
GGGACAACCC GGAACGTGCC CAGGCGCTCG GCAAAGAACG GACCCAACTG GAAGGTGTGG TCAATCGGCT
GAACGAGATC GCGGCCGGCA TCGACGACGC GGCAGAGCTG CTCCAACTCG CGGTCGAGGA AGACGACGAG
GACAGCGTCG AATCGGTCGC CGCGGATCTG GCGCACTATG AAAGCGTCGT CGCCGAAATG GAATTCCGTC
GCATGTTCTC CGGTGAGATG GACCCGAACA ATGCGTTCCT GGACATCCAG GCCGGCTCCG GCGGCACCGA
GGCCCAGGAT TGGGCGCAGA TGCTGGAGCG CATGTACCTG CGCTGGGGAG AGCGCAAAGG CTTCAAGACC
GAACTGGTGG AAGAGTCGCC GGGCGAGGTC GCCGGCATCA AGAGCGCGAC CATCCGCTTC GAAGGCGAAT
ACGCCTACGG CTGGCTGCGT ACCGAAACCG GCGTCCACCG ACTGGTGCGG AAGTCGCCTT TCGACTCCGG
CAACCGCCGC CATACCTCGT TTTCCTCGGT GTTCGTCTCA CCGGAGATCG ACGACAACAT CGACATCGAC
ATCAACCCGG CCGACCTGCG CACCGACGTC TACCGGGCCA GCGGCGCCGG CGGACAGCAC GTCAACCGAA
CCGAATCGGC GGTGCGAATC ACCCATCTCC CCACCGGTAT CGTGGTGCAA TGCCAGAATC AGCGTTCCCA
GCACGCCAAC CGCGACTGGT GTATGAAGCA GCTGCGCGCC AAACTTTATG AATTGGAAAT GCAGAAGCGC
AATACCGAGA AGCAGAAGCT GGAAGACTCC AAATCCGACA TCGGCTGGGG CAGCCAGATC CGCTCCTATG
TGCTGGACCA GTCGCGCATC AAAGATCTGC GCACCAACGT GGAAACCGGC AACCCCCAGG CGGTGCTCGA
CGGCGACCTG GACATGTTCA TCGAAGCCAG CCTGAAGAGC GGCCTGTAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 75..77:ribosomal_frameshift |
MRELNPLYNQ IKDLKSRQDA LRGYLDFDTK QERLTEVLRE LEDPRIWDNP ERAQALGKER TQLEGVVNRL
NEIAAGIDDA AELLQLAVEE DDEDSVESVA ADLAHYESVV AEMEFRRMFS GEMDPNNAFL DIQAGSGGTE
AQDWAQMLER MYLRWGERKG FKTELVEESP GEVAGIKSAT IRFEGEYAYG WLRTETGVHR LVRKSPFDSG
NRRHTSFSSV FVSPEIDDNI DIDINPADLR TDVYRASGAG GQHVNRTESA VRITHLPTGI VVQCQNQRSQ
HANRDWCMKQ LRAKLYELEM QKRNTEKQKL EDSKSDIGWG SQIRSYVLDQ SRIKDLRTNV ETGNPQAVLD
GDLDMFIEAS LKSGL
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]