Recode v. 2.0 / Database of translational recoding events.
Details for "r200712"
| Accession number | r200712 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Rhodopseudomonas palustris BisB18 [details] |
Sequence
| Variant | BisB18 |
| GenBank IDs | NC_007925.1 |
| Sequence | DNA of 1132 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 70) |
| Description | RF2 ORF0: 1.4e-06 ORF1: 7.4e-246 |
ATGCGCGCTG AAATCGAAAG ACTCGTCGAG GAGATCAAGC AGTCAGTCGG GCTGCTGAGG AGGCATCTTT
GACGTCGATG CATCCACGGC CCGCCTCGCA GAGCTGAACA AGCTCGCCGA AGACCCCAAT CTCTGGAACG
ATCCCCAGAA AGCCCAGAAA CTGATGCAGG AGCGGACCTC GCTGGAGGAT TCGCTCGGCG GCATCGGCAA
GGTCGAGCGT GAGCTCACCG ACAACGTCGA CATGATCGAA CTCGGCGAAG CCGAGAACGA CGAAGGCGTG
GTCGCCGAAG CCGAAGCCGC GCTGAAGGCG CTGAAGAAAG AGGTCGCGCG CCGCGAGCTC GAAGCGCTGC
TGTCCGGCGA AGCCGACCGC TTCGATTCCT ATCTCGAGGT CCACGCCGGT GCCGGCGGCA CCGAGAGCCA
GGACTGGGCC TCGATGCTGC TGCGGATGTA CACCCGCTGG GCGGAGAAGC ACGGCTTCAA GATCGAATAT
CTGGAAGAGA CGCAAGGCGA AGAAGCCGGC ATCAAATCCG CGACGATTCA GATCTCCGGC CACAACGCCT
ATGGCTGGCT GAAGACCGAG GCCGGCGTGC ACCGGCTGGT GCGGATCTCG CCGTTCGACT CCAACGCGCG
ACGCCACACC TCGTTTTCGT CGGTGCAGAT CTTCCCGGTG GTCGACAACA CCATCAAGAT CGACATCGCC
GAAAGCGACG TCCGCGTCGA CACCATGCGC TCGGGCGGCG CCGGCGGTCA GCACGTCAAC AAGACCGAAT
CCGCGGTGCG GCTGACCCAC ATCCCGACCG GCGTGGCGGT GGTCTGTCAG GCCGGCCGCT CACAGCACAA
GAACAAGGCG CAGGCCTGGG ACATGCTGCG CGCGCGGCTC TACGAAATCG AATTGAAGAA GCGCGAAGAG
CAGGCCGCCG CCGACCAGGC CGCCAAGACC GATATCGGCT GGGGCCACCA GATCCGCTCC TACGTATTGC
AGCCCTATCA GATGGTGAAG GACCTGCGCA CCGGCGTGCA GACCTCGGAC ACCGCGGGCG TGCTCGACGG
CGATCTCGAC GAGTTCATGG GCGCCACCTT GGCGCAGCGC GCCTTCGGCA CCCCGCCGCC CTCGATCGAG
GACGTGGATT AG
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 69..71:ribosomal_frameshift |
MRAEIERLVE EIKQSVGLLR RHLDVDASTA RLAELNKLAE DPNLWNDPQK AQKLMQERTS LEDSLGGIGK
VERELTDNVD MIELGEAEND EGVVAEAEAA LKALKKEVAR RELEALLSGE ADRFDSYLEV HAGAGGTESQ
DWASMLLRMY TRWAEKHGFK IEYLEETQGE EAGIKSATIQ ISGHNAYGWL KTEAGVHRLV RISPFDSNAR
RHTSFSSVQI FPVVDNTIKI DIAESDVRVD TMRSGGAGGQ HVNKTESAVR LTHIPTGVAV VCQAGRSQHK
NKAQAWDMLR ARLYEIELKK REEQAAADQA AKTDIGWGHQ IRSYVLQPYQ MVKDLRTGVQ TSDTAGVLDG
DLDEFMGATL AQRAFGTPPP SIEDVD
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]