Recode v. 2.0 / Database of translational recoding events.
Details for "r200741"
| Accession number | r200741 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Staphylococcus aureus subsp. aureus MSSA476 [details] |
Sequence
| Variant | MSSA476 |
| GenBank IDs | NC_002953.3 |
| Sequence | DNA of 1111 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 73) |
| Description | RF2 ORF0: 7.3e-07 ORF1: 8.4e-256 |
ATGGAATTAT CAGAAATCAA ACGAAATATA GATAAGTATA ATCAAGATTT AACACAAATT AGGGGGTCTC
TTTGACTTAG AGAACAAAGA AACTAATATT CAAGAATATG AAGAAATGAT GGCAGAACCT AATTTTTGGG
ATAACCAAAC GAAAGCGCAA GATATTATAG ATAAAAATAA TGCGTTAAAA GCAATAGTTA ATGGTTATAA
AACACTACAA GCAGAAGTAG ATGACATGGA TGCTACTTGG GATTTATTAC AAGAAGAATT TGATGAAGAA
ATGAAAGAAG ACTTAGAGCA AGAGGTCATT AATTTTAAGG CTAAAGTGGA TGAATACGAA TTGCAATTAT
TATTAGATGG GCCTCACGAT GCCAATAACG CAATTCTAGA GTTACATCCT GGTGCAGGTG GCACGGAGTC
TCAAGATTGG GCTAATATGC TATTTAGAAT GTATCAACGT TATTGTGAGA AGAAAGGCTT TAAAGTTGAA
ACTGTTGATT ATCTACCTGG GGATGAAGCA GGGATTAAAA GTGTAACATT GCTCATCAAA GGGCATAATG
CTTATGGTTA TTTAAAAGCT GAAAAAGGTG TACACCGACT AGTACGAATT TCTCCATTTG ATTCATCAGG
ACGTCGTCAT ACATCATTTG CATCATGCGA CGTTATTCCA GATTTTAATA ATGATGAAAT AGAGATTGAA
ATCAATCCGG ATGATATTAC AGTTGATACA TTCAGAGCTT CTGGTGCAGG TGGTCAGCAT ATTAACAAAA
CTGAATCGGC AATACGAATT ACCCACCACC CCTCAGGTAT AGTTGTTAAT AACCAAAATG AACGTTCTCA
AATTAAAAAC CGTGAAGCAG CTATGAAAAT GTTAAAGTCT AAATTATATC AATTAAAATT GGAAGAGCAG
GCACGTGAAA TGGCTGAAAT TCGTGGCGAA CAAAAAGAAA TCGGCTGGGG AAGCCAAATT AGATCATATG
TTTTCCATCC ATACTCAATG GTGAAAGATC ATCGTACGAA CGAAGAAACA GGTAAGGTTG ATGCAGTGAT
GGATGGAGAC ATTGGACCAT TTATCGAATC ATATTTAAGA CAGACAATGT CGCACGATTA A
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 72..74:ribosomal_frameshift |
MELSEIKRNI DKYNQDLTQI RGSLDLENKE TNIQEYEEMM AEPNFWDNQT KAQDIIDKNN ALKAIVNGYK
TLQAEVDDMD ATWDLLQEEF DEEMKEDLEQ EVINFKAKVD EYELQLLLDG PHDANNAILE LHPGAGGTES
QDWANMLFRM YQRYCEKKGF KVETVDYLPG DEAGIKSVTL LIKGHNAYGY LKAEKGVHRL VRISPFDSSG
RRHTSFASCD VIPDFNNDEI EIEINPDDIT VDTFRASGAG GQHINKTESA IRITHHPSGI VVNNQNERSQ
IKNREAAMKM LKSKLYQLKL EEQAREMAEI RGEQKEIGWG SQIRSYVFHP YSMVKDHRTN EETGKVDAVM
DGDIGPFIES YLRQTMSHD
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]