Recode v. 2.0 / Database of translational recoding events.
Details for "r200759"
| Accession number | r200759 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Streptococcus pyogenes MGAS10394 [details] |
Sequence
| Variant | MGAS10394 |
| GenBank IDs | NC_006086.1 |
| Sequence | DNA of 1099 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 73) |
| Description | RF2 ORF0: 5.2e-08 ORF1: 1.2e-234 |
ATGGAAGTGG CTGAAATTCG CCAAAAAATA GTAGAAAATA AAGAGAAGTT GACTAGCTTC AGGAGGTCTC
TTTGACTTAG ATCGTTTGGA AGAGGAGATT GCTCTTCTTG AAAATCACAT GACTGAGCCA GACTTTTGGA
ATGACAATAT TGCAGCGCAA AAGACATCTC AAGAACTAAA TGAGTTAAAA GGTAAGTATG ATACTTTCCA
TAATATGCAA GAATTATCTG ACGAAACAGA ACTCTTACTT GAGATGCTTG ACGAAGATGA TTCTTTGAAA
GAAGAATTAG AAGAAAATCT AATGCAGCTA GATAAGATAA TGGGTGCTTA TGAAATGACG CTTCTCTTAT
CTGAACCCTA TGACCACAAT AATGCTATCT TAGAAATCCA TCCTGGTTCA GGAGGAACTG AAGCGCAAGA
TTGGGGAGAT TTACTCTTAC GAATGTATAC CCGTTTTGGT AATGCTAATG GTTTCAAAGT AGAAGTATTG
GATTATCAAG CAGGAGATGA AGCTGGTATT AAATCGGTTA CCCTCTCTTT TGAAGGCCCC AATGCTTACG
GTTTGTTGAA ATCAGAAATG GGAGTTCATC GCCTCGTTCG TATATCACCT TTTGATTCAG CTAAACGTCG
TCATACTTCA TTTGCTTCAG TTGAAGTGAT GCCAGAGTTA GATGATACGA TTGAAGTAGA AGTACGTGAT
GATGACATTA AAATGGATAC TTTCCGTTCC GGAGGAGCTG GTGGTCAGAA CGTCAATAAA GTATCAACAG
GTGTTCGTTT GACGCATATT CCAACTGGAA TTGTGGTATC GTCTACCGTT GACCGTACTC AATATGGAAA
CCGCGATCGC GCTATGAAGA TGTTGCAGGC TAAGCTATAT CAGTTAGAAC AAGAAAAGAA AGCACAAGAA
GTAGATGCTC TCAAGGGTGA TAAAAAAGAA ATCACTTGGG GAAGTCAGAT TCGTTCTTAT GTTTTCACCC
CTTATACGAT GGTGAAGGAT CATCGTACTA ACTTTGAGCT TGCTCAGGTA GATAAGGTTA TGGATGGAGA
AATCAATGGC TTTATTGATG CCTACCTTAA GTGGCGCATT GAAGACTAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 72..74:ribosomal_frameshift |
MEVAEIRQKI VENKEKLTSF RRSLDLDRLE EEIALLENHM TEPDFWNDNI AAQKTSQELN ELKGKYDTFH
NMQELSDETE LLLEMLDEDD SLKEELEENL MQLDKIMGAY EMTLLLSEPY DHNNAILEIH PGSGGTEAQD
WGDLLLRMYT RFGNANGFKV EVLDYQAGDE AGIKSVTLSF EGPNAYGLLK SEMGVHRLVR ISPFDSAKRR
HTSFASVEVM PELDDTIEVE VRDDDIKMDT FRSGGAGGQN VNKVSTGVRL THIPTGIVVS STVDRTQYGN
RDRAMKMLQA KLYQLEQEKK AQEVDALKGD KKEITWGSQI RSYVFTPYTM VKDHRTNFEL AQVDKVMDGE
INGFIDAYLK WRIED
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]