Recode v. 2.0 / Database of translational recoding events.
Details for "r200781"
| Accession number | r200781 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Thermus thermophilus HB27 [details] |
Sequence
| Variant | HB27 |
| GenBank IDs | NC_005835.1 |
| Sequence | DNA of 1099 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 52) |
| Description | RF2 ORF0: 0.012 ORF1: 1.2e-210 |
ATGGACCTGG AACGCCTCGC GCAACGCCTG GAAGGCCTCA GGGGGTATCT TTGACATCCC CCAAAAGGAA
ACCCGTCTAA AAGAGCTGGA GCGGCGCCTC GAGGACCCCT CCCTCTGGAA CGATCCCGAG GCCGCCCGCA
AGGTGAGCCA GGAGGCCGCC CGCCTCCGGC GCACCGTAGA CACCTTCCGC TCCCTGGAAA GCGACCTCCA
GGGCCTTTTG GAGCTCATGG AGGAGCTTCC CGCCGAGGAA CGGGAGGCCC TCAAGCCCGA GCTGGAGGAG
GCCGCGAAGA AGCTGGACGA GCTCTACCAC CAGACCCTCC TCAACTTCCC CCACGCGGAA AAGAACGCCA
TCCTCACCAT CCAGCCCGGG GCCGGGGGCA CGGAGGCCTG CGACTGGGCG GAGATGCTCC TAAGGATGTA
CACCCGCTTC GCCGAGCGCC AGGGCTTCCA GGTGGAGGTG GTGGACCTCA CCCCTGGGCC CGAGGCGGGC
ATTGACTACG CCCAGATCCT GGTCAAGGGG GAGAACGCCT ACGGCCTCCT TTCCCCCGAG GCCGGGGTGC
ACCGCCTGGT GCGCCCTTCC CCCTTTGACG CCTCGGGCCG CCGCCACACC TCCTTCGCCG GGGTGGAGGT
GATCCCCGAG GTGGACGAGG AGGTGGAGGT GGTGCTCAAG CCCGAGGAGC TCCGCATTGA CGTGATGCGG
GCCTCGGGGC CCGGGGGCCA GGGGGTGAAC ACCACGGACT CGGCGGTGCG GGTGGTCCAC CTGCCCACGG
GGATCACCGT GACCTGCCAG ACCACGCGGA GCCAGATCAA GAACAAGGAA CTCGCCCTCA AGATCCTCAA
GGCCCGCCTC TACGAGCTGG AGCGGAAGAA GCGGGAGGAA GAGCTCAAGG CCCTGAGGGG CGAGGTGCGG
CCCATAGAGT GGGGAAGCCA GATCCGGAGC TACGTCCTGG ACAAGAACTA CGTCAAGGAC CACCGCACCG
GGCTCATGCG CCACGACCCG GAAAACGTCC TGGACGGGGA CCTCATGGAC CTGATCTGGG CGGGCCTGGA
GTGGAAGGCG GGCCGCCGCC AGGGGACGGA GGAGGTGGAG GCGGAGTAG
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 51..53:ribosomal_frameshift |
MDLERLAQRL EGLRGYLDIP QKETRLKELE RRLEDPSLWN DPEAARKVSQ EAARLRRTVD TFRSLESDLQ
GLLELMEELP AEEREALKPE LEEAAKKLDE LYHQTLLNFP HAEKNAILTI QPGAGGTEAC DWAEMLLRMY
TRFAERQGFQ VEVVDLTPGP EAGIDYAQIL VKGENAYGLL SPEAGVHRLV RPSPFDASGR RHTSFAGVEV
IPEVDEEVEV VLKPEELRID VMRASGPGGQ GVNTTDSAVR VVHLPTGITV TCQTTRSQIK NKELALKILK
ARLYELERKK REEELKALRG EVRPIEWGSQ IRSYVLDKNY VKDHRTGLMR HDPENVLDGD LMDLIWAGLE
WKAGRRQGTE EVEAE
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]