Recode v. 2.0 / Database of translational recoding events.

 

Details for "r200787"

Accession numberr200787 [export]
Locus nameprfB
DescriptionBacterial release factor 2
Recode statusReviewed

Organism

Genomic classBacteria (Chromosome)
OrganismVibrio cholerae O1 biovar El Tor str. N16961 [details]

Sequence

VariantN16961
GenBank IDsNC_002505.1
SequenceDNA of 1099 nucleotides [sequence]

Recoding event

Event type+1 Frameshifting (position: 76)
DescriptionRF2 ORF0: 1.2e-08 ORF1: 4.1e-268
ATGTTTGAAA TCAATCCTAT TAAAAACCGC CTGCAGGATG TGTCTGAACG CACAAATATC CTGAGGGGGT ATCTTTGACT ATGACGCCAA GAAAGAGCGT CTTGAAGAAG TCAATGCCGA ATTAGAACAA CCTGATGTCT GGACCCAACC TGAGCGTGCG CAAGCCCTCG GTAAAGAGCG TTCAGCACTT GAAGCGGTTG TGGATACCAT CGATCAACTG GATCGTGGTG TCGACGATGT CGAAGGTCTA CTAGAACTGG CCATCGAAGC GGAAGATCAA GAAACGTTTG ATGAAATTGG TCCTGAATTG GATGAGCTAG AAGCGAAACT TGAACAGCTC GAATTCCGCC GCATGTTCTC TGGCGATCAC GATTCTTCCG ATTGCTACCT TGACCTACAA GCCGGCTCTG GCGGTACAGA AGCGCAAGAT TGGACGTCGA TGCTGCTGCG CATGTACTTG CGCTGGGCAG ATGCTAAAGG CTTTAAAACC GAAGTGATTG AAGTGTCGGA AGGCGACGTA GCAGGATTGA AATCTGCGAC AGTGCGTATC ATTGGTGATT ACGCGTATGG TTGGCTACGT ACGGAAACCG GTGTACACCG TTTAGTGCGT AAATCACCGT TCGATTCAGG TGGCCGCCGT CATACGTCGT TTGCTTCGGC GTTTATCTAC CCTGAAGTAG ATGAAAACAT AGATATCGAA ATTAACCCTG CCGATCTGCG TATAGACGTG TATCGTGCTT CTGGTGCCGG TGGTCAGCAC GTTAACACCA CCGAATCGGC GGTACGTATC ACTCACGTAC CGACCAATAC GGTCGTGCAG TGTCAAAACG ATCGCTCACA GCACAAAAAC AAAGACCAAG CGATGAAGCA ACTTCGCGCC AAACTGTTTG AATTGGAGCT GCAAAAGCAG AACGCCGAGA AACAGGCTAA CGAAGATGCT AAATCCGACA TTGGTTGGGG TAGCCAAATC CGTTCTTACG TGTTGGATGA TTCACGAATC AAGGATTTAC GTACAGGTAT TGAAAACCGC AACACGCAAG CGGTACTCGA TGGTGACTTA GACAAATTTA TCGAAGCTAG CCTGAAATCA GGCCTGTAA

Product

ProductprfB
DescriptionBacterial release factor 2
Modifications75..77:ribosomal_frameshift
MFEINPIKNR LQDVSERTNI LRGYLDYDAK KERLEEVNAE LEQPDVWTQP ERAQALGKER SALEAVVDTI DQLDRGVDDV EGLLELAIEA EDQETFDEIG PELDELEAKL EQLEFRRMFS GDHDSSDCYL DLQAGSGGTE AQDWTSMLLR MYLRWADAKG FKTEVIEVSE GDVAGLKSAT VRIIGDYAYG WLRTETGVHR LVRKSPFDSG GRRHTSFASA FIYPEVDENI DIEINPADLR IDVYRASGAG GQHVNTTESA VRITHVPTNT VVQCQNDRSQ HKNKDQAMKQ LRAKLFELEL QKQNAEKQAN EDAKSDIGWG SQIRSYVLDD SRIKDLRTGI ENRNTQAVLD GDLDKFIEAS LKSGL

Publication