Recode v. 2.0 / Database of translational recoding events.
Details for "r200808"
| Accession number | r200808 [export] |
| Locus name | prfB |
| Description | Bacterial release factor 2 |
| Recode status | Reviewed |
Organism
| Genomic class | Bacteria (Chromosome) |
| Organism | Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 [details] |
Sequence
| Variant | ATCC 11842 |
| GenBank IDs | NC_008054.1 |
| Sequence | DNA of 1117 nucleotides [sequence] |
Recoding event
| Event type | +1 Frameshifting (position: 73) |
| Description | RF2 ORF0: 1.8e-09 ORF1: 3.9e-234 |
ATGGAAATCA GTGAAATTCA AAATGCTTTA GACGAGTTGC GGACCCGGCT TAACCACTTC AGGGGGTCTC
TTTGACTTCG ATAATATTAG CGAAAGCATT GAAATCAACG AAGCCAAGAT GGCGGAACCG GGCTTTTGGG
ACAATCAGGA AAAGGCACAG AAATTGATCA GTGAGACCAA CCTGCTCAAG GAAAAGCGGG ACTCCTTCCT
GGCTCTGAAA AAAGACCTGA CCGATGAAGA AACGGCCCTG GAATTGCTGC GCCTGGAAGC AGACGCGGAC
CTGCAAAAGG ACACCGAAGA CCAGCTGGCC AAGCTGCAGG AAGAGTTCCA TCAGTATGAA TTGAACCTGC
TCTTGTCGGG CGAGTACGAT GACCATAACG CCTTGATGGA AATCCACCCG GGGGCCGGCG GCACTGAAGC
CATGGACTGG GGGAACATGC TGCTCCGGAT GTACCAGCGC TATTGCGACT CCCGTGGCCT TAAGTTTGAA
GTCAACAACT TTGAACCAGG TGATGAAGCC GGTTTAAAGA GCGTCAGCGT CCGGATTTCC GGCAAGAATG
CCTACGGGCT GCTGAAGTCT GAACACGGCG TTCACCGCCT GGTCCGGATT TCGCCTTTTG ACTCAGCCAA
AAGACGGCAC ACTTCTTTTG CCTCGGTTGA AGTTATCCCC GAAGTCGATG ACTCCATTGA AATCGACATT
GATCCTAAGG ACCTAAGAAT TGACGTCTAC CGGTCATCCG GGGCGGGCGG CCAGCACATT AACAAGACTT
CCAGTGCCGT CCGGATTACC CACATCCCAA CCGGGATCGT GACGACTTCC CAGGCCCAGC GGTCCCAGTT
CCAGAACCGG GACACGGCCA TGAATGAAAT GCGGGCCAAG CTTTTCCACC TGGAAGAAGA GAAGAAGCGC
AAGGAAAAGG CGGCCTTGAA GGGTGAGCAA TTGGACATTG CCTGGGGCTC GCAGATCCGG TCTTACGTCT
TCCACCCATA CAGCATGGTC AAAGACCACC GGACCGGCTA TGAAACCGCC GATGTGGGCG GGGTGATGGA
CGGGAAGCTG GATCCCTTCA TCTACGCCTA CCTGCAGTGG CGTTTGAGCC AGGAAAATCC AGAATAA
Product
| Product | prfB |
| Description | Bacterial release factor 2 |
| Modifications | 72..74:ribosomal_frameshift |
MEISEIQNAL DELRTRLNHF RGSLDFDNIS ESIEINEAKM AEPGFWDNQE KAQKLISETN LLKEKRDSFL
ALKKDLTDEE TALELLRLEA DADLQKDTED QLAKLQEEFH QYELNLLLSG EYDDHNALME IHPGAGGTEA
MDWGNMLLRM YQRYCDSRGL KFEVNNFEPG DEAGLKSVSV RISGKNAYGL LKSEHGVHRL VRISPFDSAK
RRHTSFASVE VIPEVDDSIE IDIDPKDLRI DVYRSSGAGG QHINKTSSAV RITHIPTGIV TTSQAQRSQF
QNRDTAMNEM RAKLFHLEEE KKRKEKAALK GEQLDIAWGS QIRSYVFHPY SMVKDHRTGY ETADVGGVMD
GKLDPFIYAY LQWRLSQENP E
Publication
- Bekaert M, Atkins JF, Baranov PV. (2006) ARFA: a program for annotating bacterial release factor genes, including prediction of programmed ribosomal frameshifting. Bioinformatics. 22(20):2463-2465. [abstract]