Recode v. 2.0 / Database of translational recoding events.
Details for "r200838"
| Accession number | r200838 [export] |
| Locus name | AZ |
| Description | Ornithine decarboxylase antizyme AZ |
| Recode status | Reviewed |
Organism
| Genomic class | Eukaryota (Chromosome) |
| Organism | Lutzomyia longipalpis [details] |
Sequence
Recoding event
| Event type | +1 Frameshifting (position: 247) |
| Description | AZ ORF0: 5.8e-23 ORF1: 3.2e-109 |
ATTCGATTTC AGTCTCTTGT GGAAAAGCTA TGAATTTGTG CCCACTCGGC ATATCAATCG CTAAAAAGTT
GTTTAATTGA AAAGTCGCAA AAATTGAGCA TCAACATGCC ATCAATTATG GATTATAATC TTGAGCCAAT
GAGTAGTAGT AGTAGTAGTA AGATCGGTGG CAAGCGCTCT ACTACGAACG GGATGGACCA TGAGTCCTAC
TCCATCTCTC TCGGCGTAGG GCCTCTGTGG TACTCCTGAT GTACCTACCT CAAGAACCGA TCACGATAAA
GCGTCCTTCT CAACTGATTG CAATCGCAAA ACATCTCTTG ATTCAACAAG CTCTTCAGAG TGTTCGGACA
TTGAATACAA TGATACAAGT TGCTACTATA ATGATGACTA CAATGATATT TTGAAGAGAA TCTTGAATAA
GCAGCATCCT GTAAGGATCT CTCTGAAGCT CTATGTGACA GAGAATACTT ACAGCATATG GGATACGATC
CTCGATCGCA GCCGCAGTAT CCTGTATGTT GCATTGCCAT CAATTTTGCT GCCAGCAGCG TCTAAACAAT
CATTCATCTC TCTGCTGGAC TTTGCCGAGG AGAAACTCAA ATGCAACAGC GTGATCCTCT GCATGAGGAA
AGATCGCGAG GATCGTGCAA ATCTTGTGCG AACGTTCCTC TTTCTCGGTT TCCAGCCACT TGCACCTAAA
TCCGATTTGG CACCACAGGC CACGGATGAG GGGAACCTCT ATCTTATCTA CAACATCAAT GAGGAGTAGG
AAGGCAGATG AATGAGGGTT TGAAAAACCT TTTTAATTTC ATTTAATTTA ATATTAATAG TTCTGTCGCT
GAAATCTTCT ATTTAACAGC ATCTATATAA ACATTTAATT TCATTTTGAA AACTTTTTTC CTATACATTC
CTTATCTACC ATAAGACATT ATTTTTATTT ATCACAGCGC TTAAAATATC AATGACTTGT CAATTAATCT
TTAGAATAAT TTTATCGTTT TTGGGATGAT TTCAGTCAAA ATGTGGCGCG TTTTAGGAGA TTTTTTTAAA
AAATTTAAAC CAATTTATTC TTGAGGCCTC CTTAAACAAA TTTATCCCTA AAAAACCCCC AAAAACACTG
TATTTACGTA AAATATAAGT GAAACAAAAA TGTTTTGAAA ATATTTTTCC AATTTTTGAA ATAAGGGCTC
GAAAAAGGAG CCCCACCAAG TTTTTGAAAA AAAACTTTAT AGGGCCAAAA TTTAAGGCTC CAACCTCTAA
ATTTCACACC TAAGTGCGCC AAAAGATATC TGGGTCCCAA ACTTTTCTTT CCCGGAATTA TTTTCTGGGG
AATTTTTCCA A
Product
| Product | OAZA_ORF1 |
| Description | Ornithine decarboxylase antizyme AZ |
| Modifications | 246..248:ribosomal_frameshift |
MPSIMDYNLE PMSSSSSSKI GGKRSTTNGM DHESYSISLG VGPLWYSDVP TSRTDHDKAS FSTDCNRKTS
LDSTSSSECS DIEYNDTSCY YNDDYNDILK RILNKQHPVR ISLKLYVTEN TYSIWDTILD RSRSILYVAL
PSILLPAASK QSFISLLDFA EEKLKCNSVI LCMRKDREDR ANLVRTFLFL GFQPLAPKSD LAPQATDEGN
LYLIYNINEE
Publication
- Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]