Recode v. 2.0 / Database of translational recoding events.

Details for "r200853"

Accession number	r200853 [export]
Locus name	AZS
Description	Ornithine decarboxylase antizyme AZS
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Misgurnus anguillicaudatus [details]

Sequence

GenBank IDs	BJ819432.1,BJ821064.1,BJ824046.1,BJ826354.1,BJ828449.1
Sequence	mRNA of 702 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 205)
Description	AZS ORF0: 1.9e-37 ORF1: 7.6e-128


GCACGGGAAG AAAACTATTC GGGCATTGAC GTTGGCCGGA TGGTTAAATC CAACCTTCAG ACGATACTGA
ATAGTCACTG TTTTGTCAGA GAAAAAGAGA GTAATATATC CAAGATGCCA GTGATCGAAC TGACCCGTAA
TAAACCCGAG CGTGAAAGTT CCCATCGCTG CAGTAACCCG TGTCCGGGGC CTCTGTGGTG TTCCTGATGT
CCCTCACCCA CCCCTGAAGA TCCCAGGTGG GCGAGGGAAT GATCAAAGGG ATCACAGTCT TTCAGCTAAA
ATATTCTATT CTGATGCTCA GTTACTAGTT CTTGAGGAAG CTCCTCAGGT GAATAGCCGT GTCCGATTTT
TGCTCTTTGA GCGACGCTGC TCCGTGAACA AACGCTTGGT TTGGAGGGGT GCACTGAAGG GGACTGGTCT
TTACATTGAA ATTCCTCCTG GTGTACTTCC CGAAGGGAGC AAAGAGAGTT TTTCACTCTT GCTGGAGTTT
GCAGAGGAGA AGCTACAGGT TGATCACATT TTCATCTGCT TCCACAAGAG TCGAGATGAC AGAGCATCAT
TGCTGCGGAC GTTCAGTTTC ATGGGCTTTG AGATTGTGAG ACCAGGTCAT CCCCTTGTCC CAACCCGCCC
CGACGCTTTC TTCATGGCTT ACAGGATCGA AAGAGACTCC GATAGTGACG CATAGATTAT AATCACATAC
NT

Product

Product	OAZS_ORF1
Description	Ornithine decarboxylase antizyme AZS
Modifications	204..206:ribosomal_frameshift


MVKSNLQTIL NSHCFVREKE SNISKMPVIE LTRNKPERES SHRCSNPCPG PLWCSDVPHP PLKIPGGRGN
DQRDHSLSAK IFYSDAQLLV LEEAPQVNSR VRFLLFERRC SVNKRLVWRG ALKGTGLYIE IPPGVLPEGS
KESFSLLLEF AEEKLQVDHI FICFHKSRDD RASLLRTFSF MGFEIVRPGH PLVPTRPDAF FMAYRIERDS
DSDA

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]