Recode v. 2.0 / Database of translational recoding events.

Details for "r200859"

Accession number	r200859 [export]
Locus name	AZ
Description	Ornithine decarboxylase antizyme AZ
Recode status	Reviewed

Organism

Genomic class	Eukaryota (Chromosome)
Organism	Hydra magnipapillata [details]

Sequence

GenBank IDs	BP509442.1,BP511917.1,BP515897.1,BP519331.1,CD267228.1,CK593145.1,CN622894.1,CN631011.1,CN631702.1,CN771341.1,CN772095.1,CN773595.1,CN773665.1,CV223597.1,CV514881.1,CV659481.1,CX056085.1,DN814049.2,DT613005.1
Sequence	mRNA of 741 nucleotides [sequence]

Recoding event

Event type	+1 Frameshifting (position: 621)
Description	AZ ORF0: 2.7e-08 ORF1: 2.7e-90


GAAGATATTA AAGGTAAAAT AAACAAATAT AAAAAAATTA AATAAAAAAA AAAAATTTAC AAACAAATGA
ATTAATAATT AATTAAAAAT AATAATATCA AAAAACAACA ATCGCATAAA CAATATAAAA TCGATTTTAA
CAACCAAGAT GGAAACGATA TTTATTATTC AAAAAGAAAC AAAATCTGTT TTTAATCGTC AAAAGAATAC
ATCATGTACA AAAAATTCTC CTTAATCGAA ATCGGTATAT TGCTGTGATG GACTAGCTGG AATCCGAGGA
ACATGAAAGT ACGCAACACG TCCTCTCTGT CCTTTCTATC TTTATGAATA CAAAGAATGA GAGTTGAAGC
TCCTATCACC TCTTCTGAAT AGTCAAGAAG TTGGACAAAG CTCTCTTTAT TTCCAGATAA TAGTTCGCCT
TTTGAAATTT CAACAAATAA AATGCTACTG ATTTTTAAAC CATTCCATGA TGAAATAAAG TGGTTGCCAT
CTTTAAATTC AAATAAAAAG TGAATTAATT CTATTCCATC TTGATCACAC TCATTTGGTA ATAGAGCTTC
TTTAAAGAAG TTCTCTTTAG TCCCTTCCAA ATTATCAATG ATTTCGCTTT GAATAATATT AGGAACACCA
CCATCCAATG CACGCGTGTT TATTTCCACC CTTGTAAGAC ATTTTTTTCG TTTCCTTCGT GGCGTTCTTG
GGTTTTTCGT TTCTGGAATA AATTTTTACA TAAAAAACTG C

Product

Product	OAZM_ORF1
Description	Ornithine decarboxylase antizyme AZ
Modifications	620..622:ribosomal_frameshift


MSYKGGNKHA CIGWWCSNII QSEIIDNLEG TKENFFKEAL LPNECDQDGI ELIHFLFEFK DGNHFISSWN
GLKISSILFV EISKGELLSG NKESFVQLLD YSEEVIGAST LILCIHKDRK DREDVLRTFM FLGFQLVHHS
NIPISIKENF LYMMYSFDD

Publication

Bekaert M, Ivanov IP, Atkins JF, Baranov PV. (2008) Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. BMC Bioinformatics. 9(178). [abstract]